Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01045 ATGGGTTCCTTCCAATTCAATTTCTTCATCGTTTCTCTGTTTTCCTTCTTCTCTTACATTGTTTCTCAGCAGCCCTACACAGGATCGACCACCGCTGATTGTCCCGCCCCCCACAATTCAACCGGCAATTTGGGTTACTTTTGCAACACCCCCAATCGGAGCTGCCAGTCCTTCCTCACCTTCAGATCCCGCTCTCCATTTAACTCTGTTTCCTCCATTTCTGCTCTGTTAGGTTCCGACCCCTCCGAGCTCTCTCGGGTCAACTCCGTCAACGCCTCCGCCACTTTCCCGCCGGAGAAATTGGTGCTTGTTCCAACCACTTGTTCATGTTCGGGTCAGTTTCTTCAATCAAATGTTTCTTTTACTACCCGGGCTGGCGATAATTATTTTACCATTGCAAATGAAACCCTGCAAGGTATCTCTACTTGCCAATCTCTTATATCTCAGAATCCCAATATTAATGTCACGAGTATAAAGGGTGGGGAAAGGATTCTTGTTCCTCTTAGATGTGCTTGTCCCACCAAGAATCAAACTGATATGGGTTTCAATTACCTTTTGAGTTACTTGATTGTATCCGGTGATACTGTTTCACAAATCACTGAAAGATTTCAATCATTTGGTGCGGATAGTGGGATTGTTCTTGAAGCCAACGACCTTCAACTAGAATCCACCATCTATCCTTTTACGACTCTTTTAATTCCTCTTAGAACTGAGCCGTCGAGCACTGGAATGAAAGAGCCTTCTCCGTCACCGCCCCCGCCGCCGCCGTCTCTGCCCACTTCACCCCCTCCGGCCTCTAAAAGAACATGGGTTTATGTCCTCGTCGCCGTTGTAGGTGGAGTTGTTTTAGCTGCTGCAATTGGGGTTGTAGTTTTCTTTGTCTGTGTAAGGAAAAGGAAGAAGAAAACTGAGCATACAACTACTGAAATTGATAGCTATGAATCAACTGAGAAGCCATCAGAGAAAAAGTTGGATGGAGGATCTTCTTCTTTCACCTTGGAGAGTATATCTAGCGCTGTTCAATCTGTCAAAGCTTACAGTTTTAAAGAGCTGCAGGATGCAACTGATAATTTCAGTTCAACCCATCTGATTAAAGGATCTGTTTATCATGGCACAATCAATGGGGACTCTGCAGCGATTAAGAAGATGAATGGAGATGTGTCTAAACAGATCAATTTACTGAACAAGACGAATCACTCGAATCTCATTCGCCTTTCGGGGGTTTGTTTTGAGGAAGGACATTGGTATCTTGTTTTTGAGTATGCTGCTAAAGGGCCCTTGAGTGACTGGATTGATTCAAATGGTAGTAGCAATGACAGGTTCTTAACTTGGACACAGAGAATACAGATTGCGGTGGATGTCGCGACAGGGCTAAATTATCTCCATAGCTTCACGAATCCACCTCATGTTCACAAGGATTTGAAGATGGATAACATACTTCTTGATGGTGATTTCAGAGGCAAGATTTCAAACTTCAGTAATGCAAGATCAGCAGGATGGGAAGAAGGTGAGTTTACATTGACAATGCACATTGTTGGAACAAGAGGTTACATGGCTCCTGAGTATCTCGAAAATGGTTTGGTCTCTACAAAGCTTGATGTTTATTCATTTGGGATTTTGATAATTGAAATGCTCACCGGGAAGGAGGTTTCGGAGTTGCACCGAAAGGAGAATTTACAGTTGCCTGAACTTATTGAGAAGGTCCTTGATGAAAAGGATGGGAAGGAGTATTTAAGCCACCTGATGGATCCTTCATTAGAAGGTAACTTTCCCATTGAACTTGCTGTTCTCGTGATGAGGATCGCCAATCGATGCTTGAACAAGGATCCATCTCAACGCCCGTCCATGGATGAGATTGTTCAGTCCCTCAGTAGAATTTTGAGCAGTTCTTTATCTTGGGAGTTGTCAAACACTTCTGCGTGA 1923 43.84 MGSFQFNFFIVSLFSFFSYIVSQQPYTGSTTADCPAPHNSTGNLGYFCNTPNRSCQSFLTFRSRSPFNSVSSISALLGSDPSELSRVNSVNASATFPPEKLVLVPTTCSCSGQFLQSNVSFTTRAGDNYFTIANETLQGISTCQSLISQNPNINVTSIKGGERILVPLRCACPTKNQTDMGFNYLLSYLIVSGDTVSQITERFQSFGADSGIVLEANDLQLESTIYPFTTLLIPLRTEPSSTGMKEPSPSPPPPPPSLPTSPPPASKRTWVYVLVAVVGGVVLAAAIGVVVFFVCVRKRKKKTEHTTTEIDSYESTEKPSEKKLDGGSSSFTLESISSAVQSVKAYSFKELQDATDNFSSTHLIKGSVYHGTINGDSAAIKKMNGDVSKQINLLNKTNHSNLIRLSGVCFEEGHWYLVFEYAAKGPLSDWIDSNGSSNDRFLTWTQRIQIAVDVATGLNYLHSFTNPPHVHKDLKMDNILLDGDFRGKISNFSNARSAGWEEGEFTLTMHIVGTRGYMAPEYLENGLVSTKLDVYSFGILIIEMLTGKEVSELHRKENLQLPELIEKVLDEKDGKEYLSHLMDPSLEGNFPIELAVLVMRIANRCLNKDPSQRPSMDEIVQSLSRILSSSLSWELSNTSA 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8661066 8662988 - Lsi01G010450.1 Lsi01g01045 653703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01045 640 Pfam LysM domain 188 234 IPR018392 -
Lsi01g01045 640 Pfam Protein kinase domain 374 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01045 640 MobiDBLite consensus disorder prediction 245 263 - -
Lsi01g01045 640 ProSiteProfiles LysM domain profile. 119 166 IPR018392 -
Lsi01g01045 640 ProSiteProfiles Protein kinase domain profile. 318 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01045 640 MobiDBLite consensus disorder prediction 304 324 - -
Lsi01g01045 640 SMART serkin_6 358 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01045 640 Gene3D Phosphorylase Kinase; domain 1 331 421 - -
Lsi01g01045 640 MobiDBLite consensus disorder prediction 304 327 - -
Lsi01g01045 640 Gene3D Transferase(Phosphotransferase) domain 1 423 636 - -
Lsi01g01045 640 ProSiteProfiles LysM domain profile. 186 233 IPR018392 -
Lsi01g01045 640 Gene3D LysM domain 186 244 IPR036779 -
Lsi01g01045 640 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 4 4 637 - -
Lsi01g01045 640 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 4 637 - -
Lsi01g01045 640 MobiDBLite consensus disorder prediction 238 263 - -
Lsi01g01045 640 SUPERFAMILY Protein kinase-like (PK-like) 332 623 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01045 - - - csv:101203004 1021.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01045 Lsi-Chr1:8661066 Lsi07g00526 Lsi-Chr7:5564512 1.49E-69 dispersed
Lsi01g01045 Lsi-Chr1:8661066 Lsi01g01049 Lsi-Chr1:8683639 3.02E-65 proximal
Lsi03g00385 Lsi-Chr3:4490474 Lsi01g01045 Lsi-Chr1:8661066 1.15E-85 transposed
Lsi05g01658 Lsi-Chr5:24230059 Lsi01g01045 Lsi-Chr1:8661066 6.58E-91 transposed
Lsi10g00578 Lsi-Chr10:8397537 Lsi01g01045 Lsi-Chr1:8661066 4.35E-72 transposed
Lsi10g01250 Lsi-Chr10:16733953 Lsi01g01045 Lsi-Chr1:8661066 7.48E-33 transposed
Lsi04g00078 Lsi-Chr4:954915 Lsi01g01045 Lsi-Chr1:8661066 3.83E-29 transposed
Lsi01g01045 Lsi-Chr1:8661066 Lsi08g01423 Lsi-Chr8:22471709 1.31E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g904 . . . . . . . . . . . Cma07g00748 . Car07g00735 . . . . . . . . . . . . . . . . . . . Cone6ag1353 . Lsi01g01045 . . . . . . Bda14g01210 . . . . . . Cmo07g00769 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009934 1 1 0 1 0 2 1 1 2 1 1 2 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83275 PF00069 Pkinase 5.80E-39 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01045 Lsi_Chr01 FPKM 14.465204 15.83047 8.794845 9.142159 18.001133 16.887163 19.455313 9.806779 8.87928 9.940812