Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01049 ATGGCAATGGCAACTTCTTTTCTCTTACAATTTACACTCATTGCTTGCTTTGTGGCCATTCATGGCGGAGCAGAGAGTACTGGTTTTTCATGTTCTGTCGATTCTCCACCTTCTTGTGATGCTTATGTCTCTTACTTTGCAAAATCTTCACAGTTAATTGATCTTATGAGTATATCGAAATTGTTTGGAGTCGGTGCTTTGAAGATTGCGAGAGCTAGCAACTTGGAATCTGAGAAAGCTCCATTGTTTGATGGGCAGCTTCTGTTAGTGCCTGTAACTTGTAATTGCACTGCAAATGGAAATAATAGCTTCTTCTTTGCTAATATCACTTACAAAATCAACAAGGATGATACCTTTTATCTTGTCTCTACATCTTTCTTTGAGAATCTCAGTGATTCTGAAATGGTGGTACAAATGAACCCATCTCTATATCCAAACAATTTGACAGTGGGAGTTGAAGTTATTTTTCCTCTGTTTTGTAAGTGTCCTTCTGAGAAAAACTTGGAACAGGGGATTCAAAATTTCATTACATATATATGGAAACCCACTGATGAGGTTTCTGGGGTGAGATCAATTTTTAATGTCTCAAAAGATGGAATTTTGGAAGATTTGAAAGGTGTAAACTTGACAAATTTTGTAGCTGGTAAGCCTGTGTTTATTCCTGTTTCGAAACTTCCTCTGCTTTCTCAATCTCCTCCTCCTCAGAGGAAAAAGATCAAACACCTTGTGGTCGTAATTGTTGCTGTGGCTTTGGGTATTAGTTTTTTCTTGGGAGCTTCTTTAATGGCTTATATTTGGTTTATTTACAAGAAAAAGAAGCAACCCATCTGGGGAAATTCCATTAAAATGAAGATGAAACAGAATGGGGAGCTTCGTTTTTCTCCTCCTGTGGTTTCAGATTACTTGGGAAGGCCAATTTTATACGATTATAAAGTGATAATGGATGCAACAATGAGCTTCAACGAGGGGTTTAAGATTGGGAAGTCAGTATACAGAGCGACAATCAATGGAGAAATCTCAGTGATAAAGGAAGCTAAACCAGATTCAAAAGATGAGCTGATGATTTTACAGAAAGTCAATCATATAAACCTGGTGAAATTGTTAGGTTTCTCATCAGATGATAAGGAGAATTTTTACTTGGTTTATGAATTTGCTGAAAATGGTTCGTTGGATAAGTGGCTTTATTCATCATCTGAAGCTTCTTCAAGCCATCTCACATGGAACCAAAGGCTGAACATAGCATTGGATGTAGCTAATGGGTTGCAATATATGCATGATCACACTCAACCAAGCATAGTCCATCAAGATATCAAAACAAGTTGTATCCTTCTAGACTTGAGATTCAGAGCAAAGATTTCAAATCTCGCTAAGGCAAGACCTGCTGTGAGCTCTCTGTCCACGAAAGACGATGTTTTTGCTTTTGGGGTTGTGATTTTGGAGCTGCTTTCAGGGAAAAAAACAATGGAGCGTACTGAAAATGGTGAAAACGAAGAAGAAGTTGGGATTTTGTGTAAGGAGATAAGGGATGTTTTAGATAATGAAGAAGGAAGAGAAGAAAAGTTCAGAGATTGGATGGACACAAAAGTAAAGGATTGTTACCCAATTGAAGGAGCTTTGAGCTTAGCAGTAATGGCGAGGGCTTGTACACAAGATGAACCTCTGTCAAGGCCAAGTATGGCGGAAATTGTCTTCAATCTCTGTGTTCTTGCTGAATCTTCCCCGGAAAAGGCAGAAAAATCATGGGTTTCTCTTTTGGAAGCAGATGAAATCGGCCATAGCCATAGCCCCATTCGAGCTCGTTAA 1803 38.6 MAMATSFLLQFTLIACFVAIHGGAESTGFSCSVDSPPSCDAYVSYFAKSSQLIDLMSISKLFGVGALKIARASNLESEKAPLFDGQLLLVPVTCNCTANGNNSFFFANITYKINKDDTFYLVSTSFFENLSDSEMVVQMNPSLYPNNLTVGVEVIFPLFCKCPSEKNLEQGIQNFITYIWKPTDEVSGVRSIFNVSKDGILEDLKGVNLTNFVAGKPVFIPVSKLPLLSQSPPPQRKKIKHLVVVIVAVALGISFFLGASLMAYIWFIYKKKKQPIWGNSIKMKMKQNGELRFSPPVVSDYLGRPILYDYKVIMDATMSFNEGFKIGKSVYRATINGEISVIKEAKPDSKDELMILQKVNHINLVKLLGFSSDDKENFYLVYEFAENGSLDKWLYSSSEASSSHLTWNQRLNIALDVANGLQYMHDHTQPSIVHQDIKTSCILLDLRFRAKISNLAKARPAVSSLSTKDDVFAFGVVILELLSGKKTMERTENGENEEEVGILCKEIRDVLDNEEGREEKFRDWMDTKVKDCYPIEGALSLAVMARACTQDEPLSRPSMAEIVFNLCVLAESSPEKAEKSWVSLLEADEIGHSHSPIRAR 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8683639 8685441 + Lsi01G010490.1 Lsi01g01049 653707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01049 600 ProSiteProfiles Protein kinase domain profile. 251 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01049 600 Gene3D Transferase(Phosphotransferase) domain 1 385 462 - -
Lsi01g01049 600 SMART serkin_6 320 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01049 600 Gene3D Phosphorylase Kinase; domain 1 301 384 - -
Lsi01g01049 600 Pfam Protein tyrosine and serine/threonine kinase 347 456 IPR001245 GO:0004672|GO:0006468
Lsi01g01049 600 Gene3D Transferase(Phosphotransferase) domain 1 463 586 - -
Lsi01g01049 600 PANTHER SERINE/THREONINE RECEPTOR-LIKE KINASE NFP 8 600 - -
Lsi01g01049 600 SUPERFAMILY Protein kinase-like (PK-like) 301 566 IPR011009 -
Lsi01g01049 600 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 8 600 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01049 - - - csv:101203481 883.634
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01049 Lsi-Chr1:8683639 Lsi10g00578 Lsi-Chr10:8397537 0 dispersed
Lsi01g01045 Lsi-Chr1:8661066 Lsi01g01049 Lsi-Chr1:8683639 3.02E-65 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g905 . . Bda04g00317 . . . Bma09g00351 . . . . Cma07g00750 . Car07g00737 . . . . . . . . . . . . . . . . . . . Cone6ag1352 . Lsi01g01049 . . . . . . . . . . . . . Cmo07g00772 . . . . . . . . . . . . . . . . . . . . . . Chy02g00965 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002802 1 2 1 0 0 1 2 2 2 2 2 1 2 2 2 2 1 2 2 1 2 2 1 1 0 2 2 1 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83276 PF07714 PK_Tyr_Ser-Thr 8.30E-17 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01049 Lsi_Chr01 FPKM 165.279541 184.89267 1.460555 1.381406 27.918745 26.918858 28.578882 2.040279 2.393246 2.59086