Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01051 ATGGCGAATGAGTTTGGTGAATCAACAAGTGGTCCACATCAAAACCCATCTTGGTCCACTAATAGTGACACTACTAACAATGATACTGGTGATTTTGAATGCAATATTTGCTTTGAGTTAGCTCAAGATCCAATTATCACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTGCATCATCACTCACAATGTCAAGAATGTCCTGTTTGTAAAGCTCTTATTCAGGAGGAAAAATTGGTTCCCCTTTATGGTAGGGGTAAAATTCCATCTGATCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAGTCGTCCTGCTGGGCAAAGACCTCAAACAGCACCACCCCCTGTTCCTAATGACTTTGCAAACTATGGATTTGGATTCACTGGTGGCTTTATGCCAATGGCATCAGCAAGGATTGGCAACTTCACTTTAGCTACTGCTTTTGGTGGTTTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACTGTTTATGGAACTACTTCTGGTTACCCTTATGCATTCAACACCTTCCATGGAGGTCATGGTCACCATTTTCCGCAACCGACGACTCGAGGTCAGCATGCTGATAACGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTAATTCTTGCCTTGCTCTGGTGGTAA 687 41.63 MANEFGESTSGPHQNPSWSTNSDTTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPSRPAGQRPQTAPPPVPNDFANYGFGFTGGFMPMASARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPYAFNTFHGGHGHHFPQPTTRGQHADNVLKNLLLLVGVFVILALLWW 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8701448 8702134 - Lsi01G010510.1 Lsi01g01051 653709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01051 228 MobiDBLite consensus disorder prediction 1 24 - -
Lsi01g01051 228 Pfam Zinc finger, C3HC4 type (RING finger) 33 74 - -
Lsi01g01051 228 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Lsi01g01051 228 MobiDBLite consensus disorder prediction 94 120 - -
Lsi01g01051 228 CDD RING-HC_AtRMA_like 32 76 - -
Lsi01g01051 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lsi01g01051 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 91 IPR013083 -
Lsi01g01051 228 SMART ring_2 34 74 IPR001841 -
Lsi01g01051 228 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 227 - -
Lsi01g01051 228 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Lsi01g01051 228 SUPERFAMILY RING/U-box 30 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01051 Lsi-Chr1:8701448 Lsi03g01745 Lsi-Chr3:28822855 5.43E-28 dispersed
Lsi05g00445 Lsi-Chr5:5713066 Lsi01g01051 Lsi-Chr1:8701448 4.17E-06 dispersed
Lsi08g00385 Lsi-Chr8:10602672 Lsi01g01051 Lsi-Chr1:8701448 7.15E-06 transposed
Lsi01g01051 Lsi-Chr1:8701448 Lsi08g01421 Lsi-Chr8:22453337 8.66E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01051 K10666 - csv:101205026 445.662