Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01053 ATGGCGTCCAGAAAAACCCTAGCTCGCCGCCTCTTCAACGCCTCCAATCGGCTACTTTTCCGAAATTCCGCCGCCGATAAATCCATTAACCTCCCACTCGATCCCGGAGATCATGGAATTTCTCGCCGATTTCTTCATCGGAGGCCCAATTTTCCCCCTCCCGCCACATTCACCCGATCGCTTCCGCCATTGCCGGTCGGATTCGGGAATGTGATGGAACAGCTCGTTTCGCGCGATAGGATTCTTCTAGATGGACTGAAGCCTCCGATGCCGGCGCCGGGGCAGGTTCCGGATGAATTGGAGGGACTTACGGTGGAGGAGACGAGGAAGTTAGTGAAATTGACGGAGGTGGTGAGATTGAAGAGGAAATTGAAGCAGATTCCGAGGAGTTGGATTACGTATCAGGAATTCGTTCGGATTTGTGGAGAAGATTGTTCAGATAATAATGGAGATAATGAAAATTATGGGGTTGAGTTGGCCAAGAGGCTTGATCATTCCGGTGCCGTCATCGTTTTGGGCAACTTCGTCTTTCTCGATCCCGAGCAGATGGCAAAATCAATAGCTAGCTTGATTCCCACGCTAGGAATCAACAACGAAGTCTCAACAGGCAACCAGGAGCTCGAAGAAATGGAAAAACAGAAGGCCATGATCGACGGCAAGGCCGATCAACAAGCTCGCCGTGAATTCCGGTGGGGCCTCGGGTTTCTAGTGGCTCAAACCGCCGCCCTAATGAGGTTGACATTTTGGGAGTTAACTTGGGACGTAATGGAGCCAATTTGCTACTTCATAACGTCAACATATTTCATGGGTGGTTATGCCTTCTTTCTAACCACTTCCAAAGAGCCTTCTTTTGAAGGGATTTACCAAAGCCGCTTCATCGCTAAGCAAAAGCATCTCATGAAGCTCCACAATTTTGACATCCATAAATACAATCGCCTTCGAGGACATGATGATTCCAATCAATTTCCTTCTTCAAATCATCAGTTTTTTTAA 993 48.24 MASRKTLARRLFNASNRLLFRNSAADKSINLPLDPGDHGISRRFLHRRPNFPPPATFTRSLPPLPVGFGNVMEQLVSRDRILLDGLKPPMPAPGQVPDELEGLTVEETRKLVKLTEVVRLKRKLKQIPRSWITYQEFVRICGEDCSDNNGDNENYGVELAKRLDHSGAVIVLGNFVFLDPEQMAKSIASLIPTLGINNEVSTGNQELEEMEKQKAMIDGKADQQARREFRWGLGFLVAQTAALMRLTFWELTWDVMEPICYFITSTYFMGGYAFFLTTSKEPSFEGIYQSRFIAKQKHLMKLHNFDIHKYNRLRGHDDSNQFPSSNHQFF 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8723465 8725276 - Lsi01G010530.1 Lsi01g01053 653711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01053 330 Coils Coil 207 227 - -
Lsi01g01053 330 Pfam Mitochondrial calcium uniporter 155 313 IPR006769 -
Lsi01g01053 330 PANTHER CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL 1 315 IPR039055 GO:0051560
Lsi01g01053 330 PANTHER CALCIUM UNIPORTER PROTEIN 4, MITOCHONDRIAL 1 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01053 K20858 MCU; calcium uniporter protein, mitochondrial - csv:101205500 542.347
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01053 Lsi-Chr1:8723465 Lsi10g00642 Lsi-Chr10:8941022 8.66E-91 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g912 . . Bda04g00320 Bda10g00321 . . Bma09g00354 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1347 . Lsi01g01053 . . . . . . . . Bpe06g00247 Bma03g01058 . Sed01g0082 . . . . . . . . Bhi10g02232 Tan07g1029 Cmetu11g0018 . Hepe10g0829 . . . . . . . . . . . Chy02g00973 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013769 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01053 Lsi_Chr01 FPKM 8.232427 6.31926 9.619377 7.291873 3.099528 3.222949 3.14971 5.432907 5.616674 5.167828