Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01055 ATGACAGGCTCAGCCACGCTCGCCAAACCGGCCACCTTCCTCTCTCCCTCTCCTTCTTCTTTCACGCTTCTGCAACTCAGACCTAAGTTTCCTCTCCTCTATATTGCTTTCCTACCACAGCTCTCACAGAATCGCATTGTAACTGTTTTGGCTCTGGAGAAGCAGAGAGAACTTGCTGAAAATGCTAGTAATGGAGTACCTACAAAGAAGCAAAGTGCTGGGGAATTACGTCTTCACAAAGGTTTGCCACAATTCAATGGAGTGGGTGTTATTAAATCGGTTGACTTGAGTGGGACTGGAAATTTTGCTTGTGTTGTGAAAAAAGGTGGTCCATCCTTACTCATGACTTATTGGTTAAGAGGGGCTTCCAAATTTCATTGCCCTTTTGATATTAGTGAGCTGAATCTACCCAAGTCATGTAATATAAGCTTTCCTAATGGCAAGGATGACCTCATGAACTTTGAGGTTTATCATCCAAACATTGACTTGGAAGGAAATGTGTGCCTCAACATTTTACGGGAAGATTGGAAGCCTGTTCTCAATATTAACACTGTTATTTATGGACTCTACCATTTGTTCACGGAACCAAACGATGAAGACCCACTGAATCATGATGCTGCTGCAGTTTTAAGAGACAATCCGAAGTTGTTTGAATCTAATGTGAGAAGGGCTATGGCTGGGGGTTACGTGGGGCAGACCTTTTTCCCACCATGTGTGGGGGTTGAAGAGAAGGAGATGATAGGGCCACAAACAGGAGCCGGCGGCGAAGGTGTAGATGATGAAATGGATGTTGTAATACCCTGCGGTGGCATCTTCATTTCTCATGATATGGACAAACATAACACATGGACAACATGCACAAAAACAGATTCCAAAATTAATATTCCAAAAAAAATGAGGGTATTCAAAATACGCGTGCTCATAAGGGATAACGTAGGCCGTAGATGGGCCCCGGAATTGACGGTTCTGAATGTTGGGTACACGTGGCACGCATTCCGCCCATCACTGCAGCTTAGTGGCGTAGCGCGCAATTTTAACGGCAAACGAAGGTTCGGTTTAAACGACGTTAACGGAGGCACAGCCCAACGGCGCCCCCGTGAGCGTGAGTGA 1110 45.41 MTGSATLAKPATFLSPSPSSFTLLQLRPKFPLLYIAFLPQLSQNRIVTVLALEKQRELAENASNGVPTKKQSAGELRLHKGLPQFNGVGVIKSVDLSGTGNFACVVKKGGPSLLMTYWLRGASKFHCPFDISELNLPKSCNISFPNGKDDLMNFEVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNDEDPLNHDAAAVLRDNPKLFESNVRRAMAGGYVGQTFFPPCVGVEEKEMIGPQTGAGGEGVDDEMDVVIPCGGIFISHDMDKHNTWTTCTKTDSKINIPKKMRVFKIRVLIRDNVGRRWAPELTVLNVGYTWHAFRPSLQLSGVARNFNGKRRFGLNDVNGGTAQRRPRERE 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8757168 8763319 + Lsi01G010550.1 Lsi01g01055 653713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01055 369 Gene3D Ubiquitin Conjugating Enzyme 129 238 IPR016135 -
Lsi01g01055 369 SUPERFAMILY UBC-like 141 238 IPR016135 -
Lsi01g01055 369 SMART ubc_7 69 230 - -
Lsi01g01055 369 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 156 229 - -
Lsi01g01055 369 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 67 230 IPR000608 -
Lsi01g01055 369 PANTHER - 128 156 - -
Lsi01g01055 369 PANTHER - 156 229 - -
Lsi01g01055 369 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 128 156 - -
Lsi01g01055 369 Pfam Ubiquitin-conjugating enzyme 155 224 IPR000608 -
Lsi01g01055 369 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 157 172 IPR023313 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01055 K10579 UBE2M, UBC12; ubiquitin-conjugating enzyme E2 M [EC:2.3.2.34] - csv:101205966 243.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01055 Lsi-Chr1:8757168 Lsi11g01069 Lsi-Chr11:18680659 2.00E-68 dispersed
Lsi01g01055 Lsi-Chr1:8757168 Lsi05g01167 Lsi-Chr5:19606720 2.75E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g922 . . Bda04g00324 Bda10g00313 . . . . . . . Cma07g00755 . Car07g00742 . . . . . . . . . . . . . . . . . . . . . Lsi01g01055 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy02g00976 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0063203 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01055 Lsi_Chr01 FPKM 8.495085 8.867001 22.49412 22.087009 32.648926 31.353987 35.972515 29.856195 31.217857 29.988586