Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01104 ATGATACCCTTTTTCCCATCTTCTTCAAATTCCTTTCTCAGGTTCTTTTTCTTCTGTGTCTTTCTTACTGTTTTCTCCTTCTCTGCCTCATCTGTAACTCCATCTTCTTCTTCTCATGGAGACACCCAGAAACTTGTTTCCTTCAAATCTTCACTTCCAAACCCAACCCTTCTTCAGAACTGGCTCTCCAATGCTGACCCATGTTCGTTTTCTGGTATTACCTGTAAGGAAACCAGAGTCTCCGCCATAGACTTGAGCTTCTTGTCTTTGAGTTCTAATTTCAGTCATGTGTTCCCTTTACTTGCGGCTCTTGACCATTTGGAATCGCTTTCTCTCAAATCCTCTAACCTCACTGGCTCCATTTCTTTGCCCTCTGGATTCAAGTGTAGTCCTTTGCTTTCTTCTGTAGATCTGTCTCTTAATGGCTTGTTTGGTTCTGTTTCTGATGTCTCCAACTTGGGGTTTTGCTCCAATGTTAAGTCGCTTAATCTGTCCTTTAACTCTTTCGATTTTCCTCTTAAAGACTCTGCCTCTGGATTGAAGCTTGATTTGCAGGTTCTTGATCTTTCTTCTAACCGGATTGTTGGGTCTAAATTAGTTCCATGGATTTTCTCTGGTGGGTGTGGTAATTTGCAGCACTTGGCATTGAAGGGAAACAAAATCAGCGGCGAGATTAATCTATCGTCTTGTAATAAACTCGAGCATTTGGATATCTCCGGCAACAATTTCTCTGTGGGTATTCCGTCGTTAGGTGATTGCTCTGTTTTGGAACATTTTGATATCTCCGGCAATAAGTTCACCGGCGACGTCGGACATGCTCTGTCGTCTTGTCAGCAACTCACCTTTCTGAATCTTTCCAGCAACCAGTTCGGAGGTCCAATCCCTTCGTTTGCATCGCCCAATTTGTGGTTTCTTTCGCTGGCTAACAACGATTTCCAGGGGGAGATTCCTGTAAGTATTGCAGATTTGTGTTCTAGTTTGGTAGAGCTCGATCTTTCTTCTAATAGTTTGATTGGGGGTTTGCCTACTGCTTTGGGGTCTTGTTCTTCGCTGCAAACTTTAGACATTTCGAAAAATAATCTCACTGGTGAGCTCCCCATTGCCGTTTTTGCCAAAATGAGTAGTCTCAAGAAACTCTCTGTTTCAGACAATAAGTTTTTTGGGGTTTTGTCGGATTCTCTGTCTCAGCTCGCCATTTTGAATTCTTTGGATCTGAGCTCCAATAACTTTTCTGGGTCGATTCCGGCGGGTCTATGTAAAGACCCTAATAACAGCTTGAAAGAGCTGTTTCTTCAAAACAATTGGTTGACAGGTCGAATCCCTGCGAGTATTAGTAATTGTTCACAGCTGGTTTCTCTTGATTTGAGCTTCAACTTTCTTAGTGGGACGATCCCTTCCAGCTTGGGATCGCTTTCTAAGCTTAAGAACTTGATTATGTGGTTGAATCAGCTGGAGGGGGAGATTCCATCGGATTTTAGCAACTTTCAAGGGCTTGAGAATCTGATCCTGGATTTCAATGAGCTCACCGGGACCATCCCTTCCGGGTTAAGCAACTGCACCAACTTGAACTGGATTTCGTTGTCGAACAACCGGTTGAGCGGAGAGATTCCCGCCTGGATTGGGAGCCTACCGAGCCTTGCCATTCTTAAGCTCAGCAACAACTCGTTCTACGGTAGGATTCCTCGGGAGCTTGGCGATTGTCGGAGCTTGATCTGGCTTGACCTTAATACCAATCTCTTGAATGGAACAATCCCTCCGGAGCTGTTTCGTCAATCGGGTAACATTGCTGTTAACTTTATCACAGGGAAGTCTTATGCTTACATTAAGAATGATGGTAGTAAGCAGTGCCATGGAGCTGGAAATTTGCTTGAGTTTGCTGGAATAAGACAGGAACAAGTGAACAGGATTTCAAGCAAGAGTCCTTGCAATTTCACTAGGGTTTATAAAGGAATGACTCAGCCCACTTTTAACCATAATGGCTCCATGATCTTTCTTGATCTTTCCCACAATATGTTGTCTGGTAGTATTCCTAAGGAGATTGGTTCTACAAACTATCTCTACATTTTGGATTTGGGACATAACAGTCTCTCTGGACCGATTCCGCAGGAGCTGGGTGACTTGACGAAACTTAACATTCTTGATCTCTCAAGCAATGAGCTTGAAGGATCAATTCCATTGTCTTTGACTGGACTTTCCTCCCTCATGGAGATTGATCTGTCCAACAATCATCTCAATGGTTCAATACCCGAATCAGCTCAGTTCGAAACATTCCCGGCATCTGGTTTTGCAAATAATTCTGGCCTCTGTGGGTATCCTCTCCCTCCATGTGTGGTTGATTCAGCAGCAAATGCAAATTCTCAGCATCAAAGATCTCATAGGAAACAGGCATCCCTTGCAGGGAGTGTTGCAATGGGGTTACTCTTCTCCCTCTTCTGTATTTTTGGTCTGATTATCGTCGTTATCGAGATGAGGAAGAGAAGGAAAAAGAAGGATTCTACTCTTGATTCTTATGTTGAGAGTCATTCCCAATCAGGCACGACCACCGCCGTTAATTGGAAGTTAACCGGTGCCCGTGAAGCATTGAGCATCAATCTTGCAACATTTGAGAAGCCACTACGCAAGCTTACATTTGCTGATCTTCTTGAGGCTACTAATGGCTTCCACAACGATAGCCTGATTGGTTCGGGGGGTTTCGGCGACGTATACAAGGCTCAATTGAAGGATGGAAGCACTGTAGCCATCAAGAAGCTGATTCATGTCAGTGGACAGGGTGATCGAGAATTCACTGCAGAAATGGAAACCATTGGCAAAATCAAACACCGAAACCTGGTACCGCTTTTAGGCTACTGTAAAGTTGGAGAAGAACGGCTTCTGGTATACGAGTACATGAAATATGGAAGCTTGGAAGACGTTTTACATGACCAGAAGAAAGGCAGTATCAAACTGAATTGGGCAGCAAGAAGAAAAATTGCCATTGGAGCTGCAAGGGGACTGGCTTTCCTTCACCACAATTGCATCCCTCACATCATTCACAGGGACATGAAATCAAGCAATGTCTTACTGGATGAGAATTTGGAAGCTAGAGTCTCAGATTTTGGAATGGCAAGACTAATGAGTGCCATGGACACTCATTTGAGTGTCAGCACATTAGCCGGAACACCCGGTTACGTCCCTCCCGAATATTACCAAAGCTTCCGCTGTTCTACAAAAGGCGACGTTTACAGTTACGGTGTCGTCATGCTCGAGCTCTTAACAGGAAAACGACCTACAGATTCCGCAGATTTCGGTGACAACAATCTTGTCGGATGGGTAAAACAACACGCCAAGTTGGACCTAACCGATGTTTTCGACCCCGAACTCATAAAGGAGGATCCAAGCCTCAAGATAGAACTTTTAGAACACTTGAAGGTAGCTGTTGCTTGCTTAGACGATAGGTCATGGCGGCGTCCAACCATGATCCAGGTAATGACAATGTTCAAGGAAATCCAAGCGGGATCGGGGATGGATTCACAATCTACGATAGGAACCGACAACGGAGGATTCAGCATCGACATGATAGATATGAGCTTAAAGGAAGTACCAGAACCAGAAGGCAAGTAA 3600 44.28 MIPFFPSSSNSFLRFFFFCVFLTVFSFSASSVTPSSSSHGDTQKLVSFKSSLPNPTLLQNWLSNADPCSFSGITCKETRVSAIDLSFLSLSSNFSHVFPLLAALDHLESLSLKSSNLTGSISLPSGFKCSPLLSSVDLSLNGLFGSVSDVSNLGFCSNVKSLNLSFNSFDFPLKDSASGLKLDLQVLDLSSNRIVGSKLVPWIFSGGCGNLQHLALKGNKISGEINLSSCNKLEHLDISGNNFSVGIPSLGDCSVLEHFDISGNKFTGDVGHALSSCQQLTFLNLSSNQFGGPIPSFASPNLWFLSLANNDFQGEIPVSIADLCSSLVELDLSSNSLIGGLPTALGSCSSLQTLDISKNNLTGELPIAVFAKMSSLKKLSVSDNKFFGVLSDSLSQLAILNSLDLSSNNFSGSIPAGLCKDPNNSLKELFLQNNWLTGRIPASISNCSQLVSLDLSFNFLSGTIPSSLGSLSKLKNLIMWLNQLEGEIPSDFSNFQGLENLILDFNELTGTIPSGLSNCTNLNWISLSNNRLSGEIPAWIGSLPSLAILKLSNNSFYGRIPRELGDCRSLIWLDLNTNLLNGTIPPELFRQSGNIAVNFITGKSYAYIKNDGSKQCHGAGNLLEFAGIRQEQVNRISSKSPCNFTRVYKGMTQPTFNHNGSMIFLDLSHNMLSGSIPKEIGSTNYLYILDLGHNSLSGPIPQELGDLTKLNILDLSSNELEGSIPLSLTGLSSLMEIDLSNNHLNGSIPESAQFETFPASGFANNSGLCGYPLPPCVVDSAANANSQHQRSHRKQASLAGSVAMGLLFSLFCIFGLIIVVIEMRKRRKKKDSTLDSYVESHSQSGTTTAVNWKLTGAREALSINLATFEKPLRKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSTVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQKKGSIKLNWAARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVMLELLTGKRPTDSADFGDNNLVGWVKQHAKLDLTDVFDPELIKEDPSLKIELLEHLKVAVACLDDRSWRRPTMIQVMTMFKEIQAGSGMDSQSTIGTDNGGFSIDMIDMSLKEVPEPEGK 1199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9118453 9122052 - Lsi01G011040.1 Lsi01g01104 653762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01104 1199 CDD STKc_IRAK 893 1162 - -
Lsi01g01104 1199 ProSiteProfiles Protein kinase domain profile. 887 1162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01104 1199 SMART serkin_6 887 1159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01104 1199 Gene3D Phosphorylase Kinase; domain 1 848 962 - -
Lsi01g01104 1199 Gene3D Transferase(Phosphotransferase) domain 1 963 1164 - -
Lsi01g01104 1199 PANTHER SYSTEMIN RECEPTOR SR160 12 1174 - -
Lsi01g01104 1199 Gene3D - 598 658 - -
Lsi01g01104 1199 Gene3D Ribonuclease Inhibitor 45 776 IPR032675 -
Lsi01g01104 1199 PRINTS Leucine-rich repeat signature 707 720 - -
Lsi01g01104 1199 PRINTS Leucine-rich repeat signature 351 364 - -
Lsi01g01104 1199 Pfam Brassinosteroid receptor island domain 593 657 IPR045381 -
Lsi01g01104 1199 SUPERFAMILY RNI-like 62 295 - -
Lsi01g01104 1199 Pfam Leucine rich repeat N-terminal domain 40 75 IPR013210 -
Lsi01g01104 1199 Pfam Leucine rich repeat 686 744 IPR001611 GO:0005515
Lsi01g01104 1199 Pfam Leucine rich repeat 497 555 IPR001611 GO:0005515
Lsi01g01104 1199 Pfam Leucine rich repeat 350 410 IPR001611 GO:0005515
Lsi01g01104 1199 SUPERFAMILY L domain-like 653 772 - -
Lsi01g01104 1199 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1009 1021 IPR008271 GO:0004672|GO:0006468
Lsi01g01104 1199 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 1174 - -
Lsi01g01104 1199 Pfam Leucine Rich Repeat 425 447 IPR001611 GO:0005515
Lsi01g01104 1199 Pfam Leucine Rich Repeat 232 249 IPR001611 GO:0005515
Lsi01g01104 1199 Pfam Leucine Rich Repeat 450 471 IPR001611 GO:0005515
Lsi01g01104 1199 Pfam Protein kinase domain 887 1156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01104 1199 SUPERFAMILY Protein kinase-like (PK-like) 873 1163 IPR011009 -
Lsi01g01104 1199 SUPERFAMILY RNI-like 272 587 - -
Lsi01g01104 1199 ProSitePatterns Protein kinases ATP-binding region signature. 893 916 IPR017441 GO:0005524
Lsi01g01104 1199 SMART LRR_typ_2 568 591 IPR003591 -
Lsi01g01104 1199 SMART LRR_typ_2 184 206 IPR003591 -
Lsi01g01104 1199 SMART LRR_typ_2 543 567 IPR003591 -
Lsi01g01104 1199 SMART LRR_typ_2 373 396 IPR003591 -
Lsi01g01104 1199 SMART LRR_typ_2 397 421 IPR003591 -
Lsi01g01104 1199 SMART LRR_typ_2 348 372 IPR003591 -
Lsi01g01104 1199 SMART LRR_typ_2 707 730 IPR003591 -
Lsi01g01104 1199 SMART LRR_typ_2 731 754 IPR003591 -
Lsi01g01104 1199 SMART LRR_typ_2 495 519 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01104 Lsi-Chr1:9118453 Lsi09g00720 Lsi-Chr9:8278768 0 dispersed
Lsi04g00446 Lsi-Chr4:4296077 Lsi01g01104 Lsi-Chr1:9118453 5.20E-07 dispersed
Lsi01g01104 Lsi-Chr1:9118453 Lsi05g01810 Lsi-Chr5:25345800 7.39E-145 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83278 PF00069 Pkinase 2.70E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01104 K13415 - csv:101209118 2244.16