Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01120 ATGGACACCGCTGGTAGACTCATTGCCGGGTCTCACAATAGAAATGAGTTTGTTCTGATCAATGCAGATGAGACTGCTCGGATCAAGTCCGTGAAAGAATTGAGTGGGCAAACATGTCAGATTTGTGGAGATGAGGTAGAGTTAACTGCTGAGGGAGAGCTCTTTGTTGCCTGTAATGAATGCGCTTTCCCAGTTTGTAGACCTTGCTATGAGTATGAGAGAAGAGAGGGAAATCAAGCTTGTCCGCAGTGTAAAACCAGATACAAGCGCATTAAAGGTAGGGTTTTTAGTATCGTTCTTCTATTATTATGGCCTTTTCGGGTGCCATATTTAACTGGCAGTCCTAGGGTTGAAGGTGATGAGGATGAAGATGATATTGATGATTTGGACAACGAGTTCGACTATGGAAACTTTGATGCTTTTGGCCCTCATCATGCCGCAGAGGGAACGTACTCGCACCTTAGCACTGGCCGTGGTTCCCACCCTAATGCCTCTCATATCCCTGGACAATCGGAGCATGAACCTTCTCCCCTTGGTTCTGAGATTCCTCTCCTGACGTATGGCGAGGAGGTAAATGGAGTTCTTCGACAGTCTCTTGTTCTCTTGGTTATGCTAATTGTTGATATTCAAAATCAAACCCATGATTATGAAATTTCTTCTGATCAACATGCTCTTGTACCCCATTTTATGGGTAACGGAAATAGAGTCTATCCAATGCCTTCTCCTGATCGATCAACTCAATGTAGACCAATGGTTCCCCACAAAGATTTTGCATTATATGGTTATGGGAGTGTGGCATGGAAGGACAGAATGGAGGATTGGAAGAAGAAGCAAAATGATAAACTTCAAGTGGTGAAACACCCAGGGGTTGGTGATGATGGAAATGATATCGACGATCCTGATTTGCCCATGATGGATGAAGCTAGGCAACCTCTATCAAGGAAATTGCCCATCTCTTCAAGCAGGATAAATCCGTACAGATTAATCATCTTGCTTCGTCTTGTTATTCTAGGCCTATTTTTTCATTACCGAATTCTTCATCCAGTTAAAGATGCCTATGGCCTGTGGTTGACTTCAGTAATATGTGAAATATGGTTTGCTGCATCGTGGATTCTCGATCAGTTTCCGAAATGGTATCCAATTGAAAGGGAAACTTATCTTGATCGGCTTTCACTGAGGTATGAAAAAGAAGGGAAACCTTCTGAATTAGCCAGTGTGGACATATTTGTTAGTACTGTTGATCCAATGAAAGAACCTCCATTGATCACTGCAAATACAGTACTCTCCATCCTTGCAGTCGACTATCCAGTCGATAAAGTTGCATGCTATGTCTCAGATGATGGTGCAGCCATGTTAACATTTGAAGCACTCTCTGAGACATCTGAATTTGCAAGGAAATGGGTTCCTTTCTGTAAGAAATTCAATATCGAGCCCCGTGCCCCAGAATTTTATTTCTCTCAGAAGATTGATTATTTGAAGAACAAGGTCCACCCAGCATTTGTCAGGGAAAGGCGAGCAATGAAGGTAAAACAATTGCTGTTCTGTTCTCTTTCAGTTGATGGAAATTATATAACCTCATTTACAGCAGTGGTTGAAGTTAGGATGCTGATCTTATATCCTATGGTTTTCTGCAACAATATTACTGACGTTCTGTTCATTTACTTTGCTTTCAACAGAGAGAATATGAAGAATTTAAGGGTAAATGCTTTGGTCTCCATGGCTCAAAAGGTTCCCGAGGATGGCTGGACAATGCAAGATGGTACTCCATGGCCTGGGAACAATGTTCGAGACCACCCTGGCATGATTCAGGTCTTCCTTGGCCAAAATGGAGTTTGTGATGTTGAAGGAAATGAGCTACCACGTTTGGTTTATGTTTCCCGTGAAAAGCGGCCAGGGTTCGAACATCACAAAAAGGCTGGTGCCATGAATGCACTGGTTCGGGTCTCGGCAGTTCTCTCAAATGCTCCTTATCTTCTCAATGTTGACTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCTACATCCGGCAAGAAAGTTTGTTATGTGCAGTTTCCTCAAAGATTTGATGGGATCGATCGGCATGATAGATATTCAAACCGGAACGTTGTATTCTTTGATATTAACATGAAAGGATTAGATGGACTACAAGGACCGATATATGTTGGTACGGGATGTGTTTTCCGGAGGGTTGCCCTGTATGGATATGATGCTCCTTCCAAGAAGAAACCCCCAAGCAAAACATGCAACTGTTTGCCAAAATGGTGCTGTCTGTGTTGTGGGTCTAGGAGCAAGAAAGGAAAGGCCAAGAATCCGAAAAAGAAGAAGACAAAGCACAGAGAAGCATCAAAGCAGATCCATGCACTTGAGAATATCGAGGAGGGAATCGAAGGAGATTTGGAGAAATCCAACATGACTTGCCATATGTTTATTGCAGACCTAAGTATAGAGAAATTGAATGCGTCTGAAATAAAATTAGCGAAAAAATTTGGGCAATCTCCAGTGTTTGTTGCCTCAACCCTGTTGGAAAATGGAGGAGTTCCCCATGAGGTGAGTGCTGCATCTCTTCTGAGAGAAGCCATTCAAGTCATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGCTGGATTTATGGTTCTGTGACTGAAGATATCTTGACTGGATTTAAAATGCACTGTCATGGATGGCGGTCTGTGTACTGCATTCCCAAGAGACCCGCGTTTAAAGGGTCGGCTCCAATCAATCTCTCAGATCGTCTTCACCAAGTTCTGCGGTGGGCTCTAGGGTCTGTTGAGATATTCTTGAGCAGACACTGTCCTATCTGGTATGGCTATGGAGGCGGGTTGAAATGGTTGGAACGATTTTCGTACATAAACTCTGTGGTCTATCCGTTGACCTCGATCCCATTGCTTGTTTACTGTAGTCTGCCCGCTATCTGTCTTCTCACTGGAAAATTTATTGTTCCTGAGTTTGGGATCTTTGACTTGTATTTGAGTATAAAATTGTTCCATTTACTGTTTAACTTGGCTTGGGCTATCAAGTATCAACCGTTGCCCCCTTCTAATCACCATCATATTTGTGAACATTTGCAGATTAGCAACTATGCTAGTCTTATTTTCATGGCACTCTTCATTTCAATCGCTGCAACCGGTATCCTTGAGATGCAGTGGGGTGGTGTTGGGATTGACGACTGGTGGAGAAATGAACAGTTCTGGGTTATTGGAGGCGTTTCGTCGCATCTTTTTGCTCTCTTCCAAGGTCTTCTCAAGGTTTTAGCTGGTGTTAGTACCAACTTCACAGTTACATCCAAAGCAGCTGATGATGGTGAATTTTCTGAGCTCTATATCTTCAAGTGGACATCATTGTTAATACCTCCCACGACCTTGTTGATCATAAACATCGTCGGTGTGATCGTCGGGATCTCAGATGCAATAAATAATGGGTATGATTCCTGGGGTCCTCTTTTCGGAAGGCTGTTTTTCGCTCTGTGGGTGATTATTCACCTCTACCCTTTCTTGAAGGGATTGTTAGGGAAACAAGATCGGTTACCAACGATCATTGTTGTTTGGTCAATTCTTTTAGCCTCAATCTTAACATTACTCTGGGTAAGGATCAACCCATTTGTATCCAAAGATGGTCCTGTTTTAGAAGTTTGCGGGTTGAATTGCGAT 3711 42.76 MDTAGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICGDEVELTAEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGRVFSIVLLLLWPFRVPYLTGSPRVEGDEDEDDIDDLDNEFDYGNFDAFGPHHAAEGTYSHLSTGRGSHPNASHIPGQSEHEPSPLGSEIPLLTYGEEVNGVLRQSLVLLVMLIVDIQNQTHDYEISSDQHALVPHFMGNGNRVYPMPSPDRSTQCRPMVPHKDFALYGYGSVAWKDRMEDWKKKQNDKLQVVKHPGVGDDGNDIDDPDLPMMDEARQPLSRKLPISSSRINPYRLIILLRLVILGLFFHYRILHPVKDAYGLWLTSVICEIWFAASWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKIDYLKNKVHPAFVRERRAMKVKQLLFCSLSVDGNYITSFTAVVEVRMLILYPMVFCNNITDVLFIYFAFNRENMKNLRVNALVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDVEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRVALYGYDAPSKKKPPSKTCNCLPKWCCLCCGSRSKKGKAKNPKKKKTKHREASKQIHALENIEEGIEGDLEKSNMTCHMFIADLSIEKLNASEIKLAKKFGQSPVFVASTLLENGGVPHEVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPLTSIPLLVYCSLPAICLLTGKFIVPEFGIFDLYLSIKLFHLLFNLAWAIKYQPLPPSNHHHICEHLQISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRLPTIIVVWSILLASILTLLWVRINPFVSKDGPVLEVCGLNCD 1237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9272017 9278743 - Lsi01G011200.1 Lsi01g01120 653778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01120 1237 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 510 - -
Lsi01g01120 1237 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1044 1236 - -
Lsi01g01120 1237 MobiDBLite consensus disorder prediction 149 178 - -
Lsi01g01120 1237 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Lsi01g01120 1237 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 564 1016 - -
Lsi01g01120 1237 MobiDBLite consensus disorder prediction 153 170 - -
Lsi01g01120 1237 Pfam Zinc-binding RING-finger 29 93 IPR027934 -
Lsi01g01120 1237 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Lsi01g01120 1237 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1044 1236 - -
Lsi01g01120 1237 SUPERFAMILY RING/U-box 25 93 - -
Lsi01g01120 1237 Pfam Cellulose synthase 1044 1225 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lsi01g01120 1237 Pfam Cellulose synthase 564 1020 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lsi01g01120 1237 Pfam Cellulose synthase 406 509 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lsi01g01120 1237 SUPERFAMILY Nucleotide-diphospho-sugar transferases 420 995 IPR029044 -
Lsi01g01120 1237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 132 IPR013083 -
Lsi01g01120 1237 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 510 - -
Lsi01g01120 1237 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 564 1016 - -
Lsi01g01120 1237 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 609 747 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01120 Lsi-Chr1:9272017 Lsi08g00202 Lsi-Chr8:4295578 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01120 K10999 - csv:101211094 2031.14