Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g01120 | ATGGACACCGCTGGTAGACTCATTGCCGGGTCTCACAATAGAAATGAGTTTGTTCTGATCAATGCAGATGAGACTGCTCGGATCAAGTCCGTGAAAGAATTGAGTGGGCAAACATGTCAGATTTGTGGAGATGAGGTAGAGTTAACTGCTGAGGGAGAGCTCTTTGTTGCCTGTAATGAATGCGCTTTCCCAGTTTGTAGACCTTGCTATGAGTATGAGAGAAGAGAGGGAAATCAAGCTTGTCCGCAGTGTAAAACCAGATACAAGCGCATTAAAGGTAGGGTTTTTAGTATCGTTCTTCTATTATTATGGCCTTTTCGGGTGCCATATTTAACTGGCAGTCCTAGGGTTGAAGGTGATGAGGATGAAGATGATATTGATGATTTGGACAACGAGTTCGACTATGGAAACTTTGATGCTTTTGGCCCTCATCATGCCGCAGAGGGAACGTACTCGCACCTTAGCACTGGCCGTGGTTCCCACCCTAATGCCTCTCATATCCCTGGACAATCGGAGCATGAACCTTCTCCCCTTGGTTCTGAGATTCCTCTCCTGACGTATGGCGAGGAGGTAAATGGAGTTCTTCGACAGTCTCTTGTTCTCTTGGTTATGCTAATTGTTGATATTCAAAATCAAACCCATGATTATGAAATTTCTTCTGATCAACATGCTCTTGTACCCCATTTTATGGGTAACGGAAATAGAGTCTATCCAATGCCTTCTCCTGATCGATCAACTCAATGTAGACCAATGGTTCCCCACAAAGATTTTGCATTATATGGTTATGGGAGTGTGGCATGGAAGGACAGAATGGAGGATTGGAAGAAGAAGCAAAATGATAAACTTCAAGTGGTGAAACACCCAGGGGTTGGTGATGATGGAAATGATATCGACGATCCTGATTTGCCCATGATGGATGAAGCTAGGCAACCTCTATCAAGGAAATTGCCCATCTCTTCAAGCAGGATAAATCCGTACAGATTAATCATCTTGCTTCGTCTTGTTATTCTAGGCCTATTTTTTCATTACCGAATTCTTCATCCAGTTAAAGATGCCTATGGCCTGTGGTTGACTTCAGTAATATGTGAAATATGGTTTGCTGCATCGTGGATTCTCGATCAGTTTCCGAAATGGTATCCAATTGAAAGGGAAACTTATCTTGATCGGCTTTCACTGAGGTATGAAAAAGAAGGGAAACCTTCTGAATTAGCCAGTGTGGACATATTTGTTAGTACTGTTGATCCAATGAAAGAACCTCCATTGATCACTGCAAATACAGTACTCTCCATCCTTGCAGTCGACTATCCAGTCGATAAAGTTGCATGCTATGTCTCAGATGATGGTGCAGCCATGTTAACATTTGAAGCACTCTCTGAGACATCTGAATTTGCAAGGAAATGGGTTCCTTTCTGTAAGAAATTCAATATCGAGCCCCGTGCCCCAGAATTTTATTTCTCTCAGAAGATTGATTATTTGAAGAACAAGGTCCACCCAGCATTTGTCAGGGAAAGGCGAGCAATGAAGGTAAAACAATTGCTGTTCTGTTCTCTTTCAGTTGATGGAAATTATATAACCTCATTTACAGCAGTGGTTGAAGTTAGGATGCTGATCTTATATCCTATGGTTTTCTGCAACAATATTACTGACGTTCTGTTCATTTACTTTGCTTTCAACAGAGAGAATATGAAGAATTTAAGGGTAAATGCTTTGGTCTCCATGGCTCAAAAGGTTCCCGAGGATGGCTGGACAATGCAAGATGGTACTCCATGGCCTGGGAACAATGTTCGAGACCACCCTGGCATGATTCAGGTCTTCCTTGGCCAAAATGGAGTTTGTGATGTTGAAGGAAATGAGCTACCACGTTTGGTTTATGTTTCCCGTGAAAAGCGGCCAGGGTTCGAACATCACAAAAAGGCTGGTGCCATGAATGCACTGGTTCGGGTCTCGGCAGTTCTCTCAAATGCTCCTTATCTTCTCAATGTTGACTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCTACATCCGGCAAGAAAGTTTGTTATGTGCAGTTTCCTCAAAGATTTGATGGGATCGATCGGCATGATAGATATTCAAACCGGAACGTTGTATTCTTTGATATTAACATGAAAGGATTAGATGGACTACAAGGACCGATATATGTTGGTACGGGATGTGTTTTCCGGAGGGTTGCCCTGTATGGATATGATGCTCCTTCCAAGAAGAAACCCCCAAGCAAAACATGCAACTGTTTGCCAAAATGGTGCTGTCTGTGTTGTGGGTCTAGGAGCAAGAAAGGAAAGGCCAAGAATCCGAAAAAGAAGAAGACAAAGCACAGAGAAGCATCAAAGCAGATCCATGCACTTGAGAATATCGAGGAGGGAATCGAAGGAGATTTGGAGAAATCCAACATGACTTGCCATATGTTTATTGCAGACCTAAGTATAGAGAAATTGAATGCGTCTGAAATAAAATTAGCGAAAAAATTTGGGCAATCTCCAGTGTTTGTTGCCTCAACCCTGTTGGAAAATGGAGGAGTTCCCCATGAGGTGAGTGCTGCATCTCTTCTGAGAGAAGCCATTCAAGTCATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGCTGGATTTATGGTTCTGTGACTGAAGATATCTTGACTGGATTTAAAATGCACTGTCATGGATGGCGGTCTGTGTACTGCATTCCCAAGAGACCCGCGTTTAAAGGGTCGGCTCCAATCAATCTCTCAGATCGTCTTCACCAAGTTCTGCGGTGGGCTCTAGGGTCTGTTGAGATATTCTTGAGCAGACACTGTCCTATCTGGTATGGCTATGGAGGCGGGTTGAAATGGTTGGAACGATTTTCGTACATAAACTCTGTGGTCTATCCGTTGACCTCGATCCCATTGCTTGTTTACTGTAGTCTGCCCGCTATCTGTCTTCTCACTGGAAAATTTATTGTTCCTGAGTTTGGGATCTTTGACTTGTATTTGAGTATAAAATTGTTCCATTTACTGTTTAACTTGGCTTGGGCTATCAAGTATCAACCGTTGCCCCCTTCTAATCACCATCATATTTGTGAACATTTGCAGATTAGCAACTATGCTAGTCTTATTTTCATGGCACTCTTCATTTCAATCGCTGCAACCGGTATCCTTGAGATGCAGTGGGGTGGTGTTGGGATTGACGACTGGTGGAGAAATGAACAGTTCTGGGTTATTGGAGGCGTTTCGTCGCATCTTTTTGCTCTCTTCCAAGGTCTTCTCAAGGTTTTAGCTGGTGTTAGTACCAACTTCACAGTTACATCCAAAGCAGCTGATGATGGTGAATTTTCTGAGCTCTATATCTTCAAGTGGACATCATTGTTAATACCTCCCACGACCTTGTTGATCATAAACATCGTCGGTGTGATCGTCGGGATCTCAGATGCAATAAATAATGGGTATGATTCCTGGGGTCCTCTTTTCGGAAGGCTGTTTTTCGCTCTGTGGGTGATTATTCACCTCTACCCTTTCTTGAAGGGATTGTTAGGGAAACAAGATCGGTTACCAACGATCATTGTTGTTTGGTCAATTCTTTTAGCCTCAATCTTAACATTACTCTGGGTAAGGATCAACCCATTTGTATCCAAAGATGGTCCTGTTTTAGAAGTTTGCGGGTTGAATTGCGAT | 3711 | 42.76 | MDTAGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICGDEVELTAEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGRVFSIVLLLLWPFRVPYLTGSPRVEGDEDEDDIDDLDNEFDYGNFDAFGPHHAAEGTYSHLSTGRGSHPNASHIPGQSEHEPSPLGSEIPLLTYGEEVNGVLRQSLVLLVMLIVDIQNQTHDYEISSDQHALVPHFMGNGNRVYPMPSPDRSTQCRPMVPHKDFALYGYGSVAWKDRMEDWKKKQNDKLQVVKHPGVGDDGNDIDDPDLPMMDEARQPLSRKLPISSSRINPYRLIILLRLVILGLFFHYRILHPVKDAYGLWLTSVICEIWFAASWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKIDYLKNKVHPAFVRERRAMKVKQLLFCSLSVDGNYITSFTAVVEVRMLILYPMVFCNNITDVLFIYFAFNRENMKNLRVNALVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDVEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRVALYGYDAPSKKKPPSKTCNCLPKWCCLCCGSRSKKGKAKNPKKKKTKHREASKQIHALENIEEGIEGDLEKSNMTCHMFIADLSIEKLNASEIKLAKKFGQSPVFVASTLLENGGVPHEVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPLTSIPLLVYCSLPAICLLTGKFIVPEFGIFDLYLSIKLFHLLFNLAWAIKYQPLPPSNHHHICEHLQISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRLPTIIVVWSILLASILTLLWVRINPFVSKDGPVLEVCGLNCD | 1237 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 9272017 | 9278743 | - | Lsi01G011200.1 | Lsi01g01120 | 653778 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g01120 | 1237 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 1 | 510 | - | - | |
Lsi01g01120 | 1237 | PANTHER | CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED | 1044 | 1236 | - | - | |
Lsi01g01120 | 1237 | MobiDBLite | consensus disorder prediction | 149 | 178 | - | - | |
Lsi01g01120 | 1237 | CDD | mRING-HC-C4C4_CesA_plant | 37 | 87 | - | - | |
Lsi01g01120 | 1237 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 564 | 1016 | - | - | |
Lsi01g01120 | 1237 | MobiDBLite | consensus disorder prediction | 153 | 170 | - | - | |
Lsi01g01120 | 1237 | Pfam | Zinc-binding RING-finger | 29 | 93 | IPR027934 | - | |
Lsi01g01120 | 1237 | ProSiteProfiles | Zinc finger RING-type profile. | 39 | 85 | IPR001841 | - | |
Lsi01g01120 | 1237 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 1044 | 1236 | - | - | |
Lsi01g01120 | 1237 | SUPERFAMILY | RING/U-box | 25 | 93 | - | - | |
Lsi01g01120 | 1237 | Pfam | Cellulose synthase | 1044 | 1225 | IPR005150 | GO:0016020|GO:0016760|GO:0030244 | |
Lsi01g01120 | 1237 | Pfam | Cellulose synthase | 564 | 1020 | IPR005150 | GO:0016020|GO:0016760|GO:0030244 | |
Lsi01g01120 | 1237 | Pfam | Cellulose synthase | 406 | 509 | IPR005150 | GO:0016020|GO:0016760|GO:0030244 | |
Lsi01g01120 | 1237 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 420 | 995 | IPR029044 | - | |
Lsi01g01120 | 1237 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 132 | IPR013083 | - | |
Lsi01g01120 | 1237 | PANTHER | CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED | 1 | 510 | - | - | |
Lsi01g01120 | 1237 | PANTHER | CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED | 564 | 1016 | - | - | |
Lsi01g01120 | 1237 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 609 | 747 | IPR029044 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01120 | Lsi-Chr1:9272017 | Lsi08g00202 | Lsi-Chr8:4295578 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g01120 | K10999 | - | csv:101211094 | 2031.14 |