Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01123 ATGGTTCGGTTGGATTTAGATGATTTCCGAACCATATTAGATACAGCCGGTGTCGATGTTTGGACTTTCATCGATACAGCTATGGAGGTCGCTTCATTGGATTACGGTAATCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCATCTCGATGCCGGAACTGTGAAACGGATCGCAACCATGACGGCCGTTCTAATGGCTGTGAAATCAAACAGAGCTCCGGTGAGGTGAAGGGAGCTTCCCCTTCGACGCCGCAGTTCGTTGTAGTGGAGGGGGACGACGATGGAGTAGACCCATATGCAGGATTGTTTGATGATGAACAGAAGAAGGTTTTGGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGCCTGAAGATGCTTTGGTTGAATTGCTTCAAAACTTAGCAGACATGGATATAACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTGAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTTAGAAAATGGAAGGAGATTGTGGATGAATGGGTCAGGTTGAATCAGCCTGGGGAGCAAACAGCTACACTCTTAGCTGATGGTGACTCACCCCAGCAAAAAGCTCCTCAAAATGGATATCATCAGGTTCCTGATTTTGCATACTCTCCAAATCCACACAATGGAGGTTCTGGGTCGGATAGAAATAACTCAGAACCGGAACCGAAGGGAAAATCCGTTCCAAGAAGAGATGCTCCGCCTAAACCAGCACAACCAGCTCCAATGTCGTCTTTAACTCCTCAAAATCTAAAAGGCAAAGAACAATCCAAGTCATGGACATCCATGAGATCCCAAAGCCAAAGAATGCCTTCTTCTCAAAGAACAAAGGCAGTGGTGGTGGTTCTCAAGGCAGACACTGGTGATATTTGGCAATGCAGTAAAGCAACATCTTCTAAATTAGGTTCTCCGTTATCGTCGAATCGGTTTACCATCCTTTCTATTTGTTACATCTTTTGA 1035 44.93 MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCETDRNHDGRSNGCEIKQSSGEVKGASPSTPQFVVVEGDDDGVDPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSDRNNSEPEPKGKSVPRRDAPPKPAQPAPMSSLTPQNLKGKEQSKSWTSMRSQSQRMPSSQRTKAVVVVLKADTGDIWQCSKATSSKLGSPLSSNRFTILSICYIF 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9306083 9308660 + Lsi01G011230.1 Lsi01g01123 653781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01123 344 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 117 198 IPR035441 -
Lsi01g01123 344 ProSiteProfiles TFIIS N-terminal domain profile. 114 191 IPR017923 -
Lsi01g01123 344 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 4 283 IPR044790 -
Lsi01g01123 344 MobiDBLite consensus disorder prediction 203 219 - -
Lsi01g01123 344 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 113 202 IPR035441 -
Lsi01g01123 344 SMART TFS2_5 119 190 IPR003617 GO:0005634
Lsi01g01123 344 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 4 283 - -
Lsi01g01123 344 CDD TFIIS_I 116 189 - -
Lsi01g01123 344 Pfam TFIIS helical bundle-like domain 139 188 IPR017923 -
Lsi01g01123 344 MobiDBLite consensus disorder prediction 203 301 - -
Lsi01g01123 344 MobiDBLite consensus disorder prediction 268 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01123 - - - csv:101211592 545.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01123 Lsi-Chr1:9306083 Lsi01g02014 Lsi-Chr1:27510061 2.20E-24 dispersed
Lsi01g01123 Lsi-Chr1:9306083 Lsi03g01422 Lsi-Chr3:25165388 7.12E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1212 . . Bda04g00345 . . . Bma09g00240 . . . Cma03g01070 Cma07g00779 Car03g00964 Car07g00767 Sed14g0207 Cpe19g00546 Cpe10g00356 Bhi03g01399 Tan03g1346 Cmetu04g0645 . Hepe04g1136 . . Cla01g01539 Cam01g1610 Cec04g1256 Cco04g1328 Clacu01g1636 Cmu01g1523 Cre04g1201 . . . . Lsi01g01123 . . . . . . . . Bpe06g00282 . . . Cmo03g01065 Cmo07g00803 . . . . . . . . . . . . . . . . . . . . . Csa06g02814 Chy02g01021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003587 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 2 1 4 3 2 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24658 PF08711 Med26 7.20E-13 No_clan Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01123 Lsi_Chr01 FPKM 2.442491 2.455822 4.362012 4.550631 6.095882 8.128437 6.757887 5.378574 5.739357 5.746372