Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi01g01125 | ATGAAAGCAGCCAACAATCAACACCAAATTATCATTCTTCACCTTCAAAACAAAATGGGTTCTAACAAACCTTACATTGTTGCAATTTTCATCCAAATTACATTTGCCGGAATGAGCCTAATGTCCAAAGCCGCCTTTGCCGCAGGTATGAACACTTACATCTTTCTCTTCTATCGTCAAGCTGCTGGCAGTGTTATCTTAGTCCCACTCACTCTCCTCTTAAAAGGGAGGGAGAAGAGGCCATTGTCTTTCAAGCATCTTTGCCAGATTTTTGTCATTTCATTGATAGGGATCACTCTTGCATTGGATGCTTATGGAGTGGCCATTAATTACACGTCAGCAACTCTTGGTGCTGCAGCCTTCAATTGCGTTCCTGTCACAACATTCTTCTTCGCAGTCTTACTAAGGATGGAGAAGGTGAAAGTAAAGAAAGCAGCAGGAATTGCAAAGGTATTGGGGATAATGGTATGCATGAGTGGTGCAGCCATTCTTGCTTTCTACAAAGGACCCTATTTGAAGCCACTTTTCACTCACCAACTTTTCCACCTTCTTCATTCTCAATCTCACCATTCTATTAAATCCCAAAACACATGGATGATTGGTTGTTTCTTCCTTCTCATCACTAGTGTTTCCTGGGGCATTTGGTTTGTTCTTCAGGCTCGGTTCTTGAAGGGGTACCCTCACCCAATGGAATTCATGTGTATGCAAACAGTGATGAGTATGGTTCAGAGTTTTGTTGTGGCCATTGCAATGGAAAGAGATCCTTTGGAGTGGAAATTGGATTGGAACATTAGACTCTTTGCTGTACTCTATTGTGGTATTTTGGTAATTGGAATTGCAAATAATGCCCAATGTTGGGTAATCAGAGAGAAGGGTCCAGTTTTCCAAGCCATGACGACGCCCTTGAATTTAATCGCAACAATAATCGGTTCCCAATTACTATTTTCCGAAGGAATTTATTTGGGAAGGTGCATCCTTGCTGGTAATGAGTCTTTACAGTGTTTTGTGGGGAAAAAGCAAAGAGCTTCTCACTCCTTCAAACAACGGCCAACTATCTCCACCACAAAAAGAGACTGA | 1077 | 41.78 | MKAANNQHQIIILHLQNKMGSNKPYIVAIFIQITFAGMSLMSKAAFAAGMNTYIFLFYRQAAGSVILVPLTLLLKGREKRPLSFKHLCQIFVISLIGITLALDAYGVAINYTSATLGAAAFNCVPVTTFFFAVLLRMEKVKVKKAAGIAKVLGIMVCMSGAAILAFYKGPYLKPLFTHQLFHLLHSQSHHSIKSQNTWMIGCFFLLITSVSWGIWFVLQARFLKGYPHPMEFMCMQTVMSMVQSFVVAIAMERDPLEWKLDWNIRLFAVLYCGILVIGIANNAQCWVIREKGPVFQAMTTPLNLIATIIGSQLLFSEGIYLGRCILAGNESLQCFVGKKQRASHSFKQRPTISTTKRD | 358 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 9353369 | 9357587 | + | Lsi01G011250.1 | Lsi01g01125 | 653783 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi01g01125 | 358 | PANTHER | WAT1-RELATED PROTEIN | 23 | 325 | - | - | |
| Lsi01g01125 | 358 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 58 | 165 | - | - | |
| Lsi01g01125 | 358 | Pfam | EamA-like transporter family | 199 | 322 | IPR000620 | GO:0016020|GO:0016021 | |
| Lsi01g01125 | 358 | Pfam | EamA-like transporter family | 23 | 153 | IPR000620 | GO:0016020|GO:0016021 | |
| Lsi01g01125 | 358 | PANTHER | WAT1-RELATED PROTEIN | 23 | 325 | IPR030184 | GO:0016021|GO:0022857 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi01g01125 | Lsi10g00702 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g01125 | Lsi-Chr1:9353369 | Lsi01g01128 | Lsi-Chr1:9413047 | 3.62E-86 | dispersed | |
| Lsi01g01124 | Lsi-Chr1:9329839 | Lsi01g01125 | Lsi-Chr1:9353369 | 7.22E-57 | tandem | |
| Lsi01g01125 | Lsi-Chr1:9353369 | Lsi01g01126 | Lsi-Chr1:9362548 | 1.45E-101 | tandem | |
| Lsi08g00554 | Lsi-Chr8:13722594 | Lsi01g01125 | Lsi-Chr1:9353369 | 7.90E-72 | transposed | |
| Lsi01g01125 | Lsi-Chr1:9353369 | Lsi10g00701 | Lsi-Chr10:9824531 | 1.08E-88 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi01g01125 | - | - | csv:101205842 | 525.013 |