Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01126 ATGACCATGATGACTATTGGATATAATGCCTATGGTGTGGCTGTTGATTATACCTCTGCAAATTTGGGTGCTGCTGCATTTAATTGCCTCCCTGTCACAACATTTCTCTTCGCTGTTTTATTAAGGATGGAGAAAGTAGACTTGAGAACAGTGGCTGGATTGGCAAAAGCTTTTGGAATATTAGTTTGCATTGGTGGAGTGATTACACTTGCATTTTACAGAGGTCCTTATTTGAAGCCAATTATCAATCATCACCTTTTGAAATTTCACCAATCTCATGCCCATCAAACTCATCCCCATTCTACTAAAACTTGGATTATTGGTTGTTTTCTTCTCATCATCTCTAGTATCTCTTGGGGTTTATGGTTTGTTCTTCAGACTTATCCATCAACATTGGATTTTGTAAGTTACCAAACGTTGTTAAGCACAGCCCAATCTTTTGTGATAGCCATTGCAATGGAAAGAGACCTTTCTGAGTGGAAATTGAGTTGGAACATTAGACTTTTTGCTGTTCTTTACTGCGGAGTTCTTACAACTATTGTTTCAAATTTATTGCAATCTTGGGTAATCAAAGAGAAGGGACCAGTTTTTCAAGCCATGACAACACCATTGAATGTCATTGCCACTATTATTGGCTCTGAATTGCTATTGGGTGAAGGAATCAACTTGGGAAGTCTCATTGGTGCAATATTGTTGGTGATAAGCCTTTACAGTGTATTATGGGGGAAAAGCAAAGAGCTCAGCATGATTGATAGAGATAGTAATAATAATCAAATAGATGTATTTGTTCCACCTGAATTACCAAAAGATTTGTCAGACATAAGATCACCCTGCTGA 837 37.63 MTMMTIGYNAYGVAVDYTSANLGAAAFNCLPVTTFLFAVLLRMEKVDLRTVAGLAKAFGILVCIGGVITLAFYRGPYLKPIINHHLLKFHQSHAHQTHPHSTKTWIIGCFLLIISSISWGLWFVLQTYPSTLDFVSYQTLLSTAQSFVIAIAMERDLSEWKLSWNIRLFAVLYCGVLTTIVSNLLQSWVIKEKGPVFQAMTTPLNVIATIIGSELLLGEGINLGSLIGAILLVISLYSVLWGKSKELSMIDRDSNNNQIDVFVPPELPKDLSDIRSPC 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9362548 9386619 + Lsi01G011260.1 Lsi01g01126 653784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01126 278 PANTHER WAT1-RELATED PROTEIN 4 255 IPR030184 GO:0016021|GO:0022857
Lsi01g01126 278 PANTHER WAT1-RELATED PROTEIN 4 255 - -
Lsi01g01126 278 Pfam EamA-like transporter family 107 240 IPR000620 GO:0016020|GO:0016021
Lsi01g01126 278 SUPERFAMILY Multidrug resistance efflux transporter EmrE 3 72 - -
Lsi01g01126 278 SUPERFAMILY Multidrug resistance efflux transporter EmrE 161 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01126 - - - csv:101219744 455.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01126 Lsi-Chr1:9362548 Lsi01g01129 Lsi-Chr1:9418589 1.52E-66 dispersed
Lsi01g01125 Lsi-Chr1:9353369 Lsi01g01126 Lsi-Chr1:9362548 1.45E-101 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1227 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi01g01126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g02809 Chy02g01024 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000096 8 10 5 6 7 6 9 8 6 9 4 7 7 13 9 7 7 3 5 7 10 11 6 9 16 8 10 19 10 2 244
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01126 Lsi_Chr01 FPKM 0.379679 0.236401 1.588026 0.620225 1.53094 2.13845 1.218998 47.026764 46.945862 44.735405