Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi01g01130 | ATGGCTGACGCCGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGCTTTGCTGGTGATGATGCTCCTAGGGCAGTTTTCCCCAGTATTGTTGGTCGACCCCGACATACCGGTGTCATGGTTGGTATGGGGCAAAAAGATGCCTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAACGAGCTTCGTGTTGCTCCCGAAGAGCACCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGAGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCTATGTACGTTGCCATCCAGGCTGTTCTGTCCCTCTATGCTAGTGGACGTACCACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTATGAGGGTTATGCTCTCCCTCATGCCATTCTTCGTTTGGACCTTGCTGGTCGTGACCTTACTGATGCTCTCATGAAGATTCTCACTGAAAGAGGTTACATGTTCACCACCACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTCGAGACTGCAAAGAGCAGTTCCTCTATTGAGAAGAACTACGAACTTCCTGATGGACAGGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTTTTATTCCAGCCATCTCTCATCGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGACGTAGATATCAGAAAGGACCTTTACGGAAACATCGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCAGACAGGATGAGCAAGGAAATCACAGCCCTCGCTCCCAGCAGCATGAAGATTAAGGTTGTTGCACCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTTGCATCTCTAAGTACCTTCCAGCAGGAAGTGCTTCTAAGCTGTGTCAATTTCTTTGATGATGATGATGATGATGATGATGATGATGATGAT | 1134 | 47.09 | MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQEVLLSCVNFFDDDDDDDDDDDD | 378 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 9427824 | 9430512 | - | Lsi01G011300.1 | Lsi01g01130 | 653788 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi01g01130 | 378 | SUPERFAMILY | Actin-like ATPase domain | 149 | 356 | IPR043129 | - | |
| Lsi01g01130 | 378 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
| Lsi01g01130 | 378 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
| Lsi01g01130 | 378 | Gene3D | - | 10 | 357 | - | - | |
| Lsi01g01130 | 378 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
| Lsi01g01130 | 378 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
| Lsi01g01130 | 378 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
| Lsi01g01130 | 378 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
| Lsi01g01130 | 378 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - | |
| Lsi01g01130 | 378 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
| Lsi01g01130 | 378 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
| Lsi01g01130 | 378 | Gene3D | - | 140 | 340 | - | - | |
| Lsi01g01130 | 378 | Pfam | Actin | 5 | 357 | IPR004000 | - | |
| Lsi01g01130 | 378 | Gene3D | Actin; Chain A, domain 4 | 182 | 273 | - | - | |
| Lsi01g01130 | 378 | PANTHER | ACTIN | 1 | 360 | - | - | |
| Lsi01g01130 | 378 | PANTHER | ACTIN | 1 | 360 | IPR004000 | - | |
| Lsi01g01130 | 378 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
| Lsi01g01130 | 378 | SMART | actin_3 | 7 | 368 | IPR004000 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi01g01130 | Lsi10g00709 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g01130 | Lsi-Chr1:9427824 | Lsi04g00880 | Lsi-Chr4:8665301 | 0 | dispersed | |
| Lsi04g00634 | Lsi-Chr4:5820813 | Lsi01g01130 | Lsi-Chr1:9427824 | 6.78E-68 | transposed | |
| Lsi01g01130 | Lsi-Chr1:9427824 | Lsi10g00709 | Lsi-Chr10:9906107 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi01g01130 | K10355 | - | csv:101215469 | 711.835 |