Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01130 ATGGCTGACGCCGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGCTTTGCTGGTGATGATGCTCCTAGGGCAGTTTTCCCCAGTATTGTTGGTCGACCCCGACATACCGGTGTCATGGTTGGTATGGGGCAAAAAGATGCCTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAACGAGCTTCGTGTTGCTCCCGAAGAGCACCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGAGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCTATGTACGTTGCCATCCAGGCTGTTCTGTCCCTCTATGCTAGTGGACGTACCACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTATGAGGGTTATGCTCTCCCTCATGCCATTCTTCGTTTGGACCTTGCTGGTCGTGACCTTACTGATGCTCTCATGAAGATTCTCACTGAAAGAGGTTACATGTTCACCACCACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTCGAGACTGCAAAGAGCAGTTCCTCTATTGAGAAGAACTACGAACTTCCTGATGGACAGGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTTTTATTCCAGCCATCTCTCATCGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGACGTAGATATCAGAAAGGACCTTTACGGAAACATCGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCAGACAGGATGAGCAAGGAAATCACAGCCCTCGCTCCCAGCAGCATGAAGATTAAGGTTGTTGCACCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTTGCATCTCTAAGTACCTTCCAGCAGGAAGTGCTTCTAAGCTGTGTCAATTTCTTTGATGATGATGATGATGATGATGATGATGATGATGAT 1134 47.09 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQEVLLSCVNFFDDDDDDDDDDDD 378
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 9427824 9430512 - Lsi01G011300.1 Lsi01g01130 653788
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01130 378 SUPERFAMILY Actin-like ATPase domain 149 356 IPR043129 -
Lsi01g01130 378 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lsi01g01130 378 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lsi01g01130 378 Gene3D - 10 357 - -
Lsi01g01130 378 PRINTS Actin signature 63 85 IPR004000 -
Lsi01g01130 378 PRINTS Actin signature 142 161 IPR004000 -
Lsi01g01130 378 PRINTS Actin signature 117 130 IPR004000 -
Lsi01g01130 378 PRINTS Actin signature 28 37 IPR004000 -
Lsi01g01130 378 PRINTS Actin signature 238 254 IPR004000 -
Lsi01g01130 378 PRINTS Actin signature 51 62 IPR004000 -
Lsi01g01130 378 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lsi01g01130 378 Gene3D - 140 340 - -
Lsi01g01130 378 Pfam Actin 5 357 IPR004000 -
Lsi01g01130 378 Gene3D Actin; Chain A, domain 4 182 273 - -
Lsi01g01130 378 PANTHER ACTIN 1 360 - -
Lsi01g01130 378 PANTHER ACTIN 1 360 IPR004000 -
Lsi01g01130 378 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lsi01g01130 378 SMART actin_3 7 368 IPR004000 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Lsi01g01130 Lsi10g00709 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01130 Lsi-Chr1:9427824 Lsi04g00880 Lsi-Chr4:8665301 0 dispersed
Lsi04g00634 Lsi-Chr4:5820813 Lsi01g01130 Lsi-Chr1:9427824 6.78E-68 transposed
Lsi01g01130 Lsi-Chr1:9427824 Lsi10g00709 Lsi-Chr10:9906107 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01130 K10355 - csv:101215469 711.835