Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01132 ATGGCTTCTTCTCACAATACTCATTCCGAGACTGCAAAAGTTGAGCAAATTTTAACTGAATTCTTCCCTAAAACGCTACAAATTATACTTGAATCGAGGGCCCCTTGTATTTCATCGCGTAATTTTAGTGGTGAACAAGTTTTGTCTTCTCCATCTTCCTCATCCTCGTCTTCCTCGAGTATGAGGCCGAGGGATAAGTGGTTCAATTTGGCTCTTCGTGAATGCTCTGCAACGTTAGAGAATATTGATCTCTGGCGTCCGAGTTATCACGAACCAATGGTCGTAGATGTTATTTTGGTGCAGAGGCAATTTGGTGTAGACTCTGTTAATGCTTCTCCTAGGAAAGATCTTGTTAGGAACTTGTCTCTGAAAGAGAAATATCCACTCTCTTTCAATTCTGATAAGGAGGAGTTTGGATGTCAGACCAAAAGTGAGAAGGTTATAGAGAGATGGATGGTGCATTATGAAAGTAGGAAAAACCGGGATAGTAATTCCGGTAGCAGAAGGTCCAGTAATAGTACTGCACACACGTATAAGAAAACCATTTTACTCTTAAGGTCTTTATATGTCTTTGTGAGACTTTTACCTGCCTATAAGGTTTTTCAAGATATCAGTTCATCTGGTCAGATTCACCCCTTTGCTCTAGCTCATCGTGTGTCTTCCTTTGCTGAGCCTTTCACCCGGAGAGAAGAGGCCGAAATGCAGCGTTTTGTGTTCACTCCTGTGGACACTTCTTGTGGTAGACTCTGCCTCTCAGTATTATACCGCTCATCCCTCTCTGATATAAACTCTGAACCATCAACTCCTATGTCTCCTCAAGTTATTCCTGAATATGTTGGGAGCCCATTGGCAGATCCTTTGAAAAGGTTTCCAACGCTCCCCGTAACGATAGCACCATCTCATGGATCTCCATCGTCGTTGCCGTTCTCGAGACGTCATAGTTGGAGTTATGACCGTTTTAGACCCTCCCCTCCTTCAGTCTCCTTTTCACCTTCACCAACACATTCAGAGTCTCATGCTTTAGTTTCAAATCCAGCCTTTCGCCGATTGCCTCCTTCAAGCTTACCTTCACAACCGCCTGAAATGGTTATGGGACATAAAGATAATATGAATTATGACGAATATTATCCTTCTCCTGTCTTTTCCCAATCACCCTCACTGTCACCACCTATTGGCATTCCTGTAAGGCGCCTGCCGAATGGACTCTTGCAGTCCGAAAGTGCTCCTCAAAGTGCACCTATAGCAAAGCTTCTTCATTCCCCTGCACTGTCAAGCAAACCGAATTTGCCACCATCCCCTCCCCTTAAAGCTTCTGGACCAATTATTTCTAGAATTAATAGAGATATTGGTCCATTGCCGGCTGGCTCTGCAATTGGAAAGTCATCTTCTCTTGGAAGAGATGAAAGCCGAAGAATTTCTAGCTGGAGGGTATCATCCAATAACTCACCAATTTCAAGAAGCTCTAGTAGATCTTTTCCAGATGATTTAGATGATCCAGAGTTTCCCTGCCCCTTTGATGTGGACGAGGATGAGATGACAGATAGAGGTAGCAGTGGAAGAGGTGTTGGTAAATTGAGAGGCAAGGGAAAGGAGTTCTTGCTTAAATGGCTTATGAAACTAGAGAAGCGTTCTGAGATTGCCACTAATAAGTTGCAGAAGAGTTGCATTGTTACTACTGGGGAAACACCAACTAATACCAAACCATCTGAGGATGTCAGACCAAATAGCAAAGGGGCGTTAAAAGAAGAGGTGCTGATGGTATTCCAAGTCAGGCCTGAATCCTTCGACCAAAAAGGAAATCTTTGTGAGATGCTGGAACCCGGGGGATTTTTCCCGCCCCGTAAATCTCAAGATGCTGCTGTTGGTGCCCTAGTACGTATGCTTCAAAAGGCTCCACCACTTCGCCAAGACTTCACGAATTCCACCACAGATCTTGGACGACCCCCTACACCTGAGTCTCCAAGCAGAAATATCCAACAGGGAAATCAGATATCCGAGTCATTGGCTTCAAAGAGTCGCTATGCTGCCTCCTCTAGTATCACAGCCTCTGGTATTTTTGTGCCTAAAACTACAGCTGATGCATTAGAAGAACTGCAGAGCTACAGAGAGATGAAGAATTTGCTGCTCAGGCAAGCTGGCAAGACTCACACATAA 2154 44.29 MASSHNTHSETAKVEQILTEFFPKTLQIILESRAPCISSRNFSGEQVLSSPSSSSSSSSSMRPRDKWFNLALRECSATLENIDLWRPSYHEPMVVDVILVQRQFGVDSVNASPRKDLVRNLSLKEKYPLSFNSDKEEFGCQTKSEKVIERWMVHYESRKNRDSNSGSRRSSNSTAHTYKKTILLLRSLYVFVRLLPAYKVFQDISSSGQIHPFALAHRVSSFAEPFTRREEAEMQRFVFTPVDTSCGRLCLSVLYRSSLSDINSEPSTPMSPQVIPEYVGSPLADPLKRFPTLPVTIAPSHGSPSSLPFSRRHSWSYDRFRPSPPSVSFSPSPTHSESHALVSNPAFRRLPPSSLPSQPPEMVMGHKDNMNYDEYYPSPVFSQSPSLSPPIGIPVRRLPNGLLQSESAPQSAPIAKLLHSPALSSKPNLPPSPPLKASGPIISRINRDIGPLPAGSAIGKSSSLGRDESRRISSWRVSSNNSPISRSSSRSFPDDLDDPEFPCPFDVDEDEMTDRGSSGRGVGKLRGKGKEFLLKWLMKLEKRSEIATNKLQKSCIVTTGETPTNTKPSEDVRPNSKGALKEEVLMVFQVRPESFDQKGNLCEMLEPGGFFPPRKSQDAAVGALVRMLQKAPPLRQDFTNSTTDLGRPPTPESPSRNIQQGNQISESLASKSRYAASSSITASGIFVPKTTADALEELQSYREMKNLLLRQAGKTHT 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9456443 9464683 + Lsi01G011320.1 Lsi01g01132 653790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01132 717 MobiDBLite consensus disorder prediction 633 661 - -
Lsi01g01132 717 PANTHER UNCHARACTERIZED 8 714 IPR040182 GO:0000045
Lsi01g01132 717 MobiDBLite consensus disorder prediction 43 62 - -
Lsi01g01132 717 MobiDBLite consensus disorder prediction 474 490 - -
Lsi01g01132 717 MobiDBLite consensus disorder prediction 346 369 - -
Lsi01g01132 717 Pfam Autophagy-related protein 13 19 258 IPR018731 GO:0006914|GO:1990316
Lsi01g01132 717 MobiDBLite consensus disorder prediction 446 524 - -
Lsi01g01132 717 MobiDBLite consensus disorder prediction 422 441 - -
Lsi01g01132 717 MobiDBLite consensus disorder prediction 634 661 - -
Lsi01g01132 717 Gene3D HORMA domain 3 261 IPR036570 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01132 K08331 ATG13; autophagy-related protein 13 - csv:101221089 900.197
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1244 . . . . . . . . . . Cma03g01079 Cma07g00785 Car03g00970 Car07g00772 Sed10g0487 Cpe19g00542 Cpe10g00349 Bhi03g01384 Tan03g1334 Cmetu08g1211 . Hepe04g1129 . . Cla01g01533 Cam01g1601 Cec04g1248 Cco04g1317 Clacu01g1626 Cmu01g1512 Cre04g1192 . . . . Lsi01g01132 . . Cme08g01066 . . . . . . . . . Cmo03g01069 Cmo07g00809 . . . . . . . . . . . . . . . . . . . . . Csa06g02800 Chy02g01035 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003829 2 1 2 3 2 1 2 2 2 1 1 1 2 1 1 2 1 2 2 2 1 1 1 2 1 1 1 1 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01132 Lsi_Chr01 FPKM 4.541844 4.143374 6.421534 6.542379 19.780323 18.02494 19.384321 6.905266 5.836824 5.341563