Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01133 ATGGAATTTGAATCCATTGAGTTCCTCACCAATTACAATTACTTTTCATCAGCTGATCAAACCTTTTTCCAAAGCCATGAATTTTCTGAATGCAGACAAGCAAATTCTTGCTCTTCTCTCTCAGAAAACTCCTCCCAAAATTCCTTCCAAGAAGGAAACTTTTTGGAATATGATGATCAAAATTTGCTTCAAATTGATCCAATCTATTACAATAACCCTGAAGATTTCCTCACAATTACCCCTGTAGATCCTCAAAACATTGAAGAATTGAGCAATTCAAGACCAGGAGAGGAGGAAGAAGAAGAAGAAGAAGAAAAGTCCAATAATATCATTTTCAAGGGAATTCAAGCAGAGCTAATGGAAGAAGAGAGCTTAACAGATCTATTACTAGCAGCAGCTGAAGCAATTGAAGCACAAAACCATCTCCTTGTTTCAAATTTGATTGAAAAGCTGAAGAATTTACTTTTATATGATATGGGTTCATCTTCATTCAACCAATTGGCTTGGTTTTTCACTCAAGGCCTTCATTACAAGACAGTTGATTATAATATTCTTGCAGCTCATCATCATCAAATCAATATTATTAATAATAACTCCATGTCAGCCTTTCAGATGCTTCAACAGCTTTCTCCTTATATAAAGTTCGCTCATTTCACTGCCAATCAAGCAATTCTTGAAGCAGCAGAAGGGGAAAAAGTGATTCATGTTATAGATTTTGATATCATGGAAGGAATTCAATGGCCACCATTAATGGCTGATCTTGCAGCTAAGAAAGAAGTTTGTTCTTTGAGATTGACAGCCATTGTACAAGACAATGAAACTGAGAGAAAGATTATTGAGCAAACAGGGAGGAGATTAAGTGAATTTGCTAAATCAATCAATCTCCCCTTCATATTTGATCAAATGGGAATTGAAAAAGAAGACGACTTTGAAGGAATTCAAGTGTTGGGTGAGACAGTAATTGGCAATTGTAGTGGCATTTTTCACCATATTTTAAGCTATAAAAACTTATCAAAGCTTGAAACTTTTTTAAATGGGGTTTCAAAACTTTCCCCTAAATGTGTAGTTTTAGTTGAAGAAGAGCTTTTTAAGGTCACTACAAGTAAGGAGCTTGGGCCTCAACCACTGTCATTTGTGGAGTTTTTCTTTGAAGCTTTTCATCATTTCTCTGCTCTTTCAGACTCACTTTTGAGATGCTTTTCTGGGGTTTATGAAAATGGATTCAAACAAGTGATGGAAGAGTTTTTAGGTACAAGAATTTTGGAATCAGTTACTCAATTCCCTTGTGATAAAACATATCAGTGGAGAAGTGCTTTTGATCACTTGAAAGACTACAAGAAAATTGCTTTTAGTTCTTTCAATTGCTCTCAAGCTAAGTATTTGATTAGTCTTTTCAGAGGAGATTTTTGGGTGCAAAATGAGAAGTGTAGCTTAAGCTTGTGTTGGAAATCAAGGCCCTTGTGTACAGCTACAATTTGGGTTCCAAGAATGGCAAATTGA 1500 35.4 MEFESIEFLTNYNYFSSADQTFFQSHEFSECRQANSCSSLSENSSQNSFQEGNFLEYDDQNLLQIDPIYYNNPEDFLTITPVDPQNIEELSNSRPGEEEEEEEEEKSNNIIFKGIQAELMEEESLTDLLLAAAEAIEAQNHLLVSNLIEKLKNLLLYDMGSSSFNQLAWFFTQGLHYKTVDYNILAAHHHQINIINNNSMSAFQMLQQLSPYIKFAHFTANQAILEAAEGEKVIHVIDFDIMEGIQWPPLMADLAAKKEVCSLRLTAIVQDNETERKIIEQTGRRLSEFAKSINLPFIFDQMGIEKEDDFEGIQVLGETVIGNCSGIFHHILSYKNLSKLETFLNGVSKLSPKCVVLVEEELFKVTTSKELGPQPLSFVEFFFEAFHHFSALSDSLLRCFSGVYENGFKQVMEEFLGTRILESVTQFPCDKTYQWRSAFDHLKDYKKIAFSSFNCSQAKYLISLFRGDFWVQNEKCSLSLCWKSRPLCTATIWVPRMAN 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9475120 9476619 + Lsi01G011330.1 Lsi01g01133 653791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01133 499 MobiDBLite consensus disorder prediction 81 107 - -
Lsi01g01133 499 Pfam GRAS domain family 126 493 IPR005202 -
Lsi01g01133 499 PANTHER OS12G0162700 PROTEIN 20 494 - -
Lsi01g01133 499 ProSiteProfiles GRAS family profile. 116 494 IPR005202 -
Lsi01g01133 499 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 494 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01133 - - - csv:101207036 768.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01133 Lsi-Chr1:9475120 Lsi08g00416 Lsi-Chr8:11607386 1.42E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1245 . . . . . . . . . . . Cma07g00786 . Car07g00773 Sed14g0002 Cpe19g00541 . Bhi03g01383 Tan03g1333 Cmetu08g0890 . Hepe04g1128 . . Cla01g01532 Cam01g1600 Cec04g1245 Cco04g1314 Clacu01g1625 Cmu01g1511 Cre04g1190 . . . . Lsi01g01133 . . Cme08g01067 . . . . . . . . . . Cmo07g00810 . . . . . . . . . . . . . . . . . . . . . Csa06g02799 Chy02g01036 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013288 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24659 PF03514 GRAS 3.40E-70 CL0063 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01133 Lsi_Chr01 FPKM 4.485026 5.61272 3.811956 4.188286 7.48706 6.506478 6.733055 4.10601 3.595958 4.168822