Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01135 ATGACCCGAGACGGCGTACAATTTGAAGCGGCGAAACGATCATATCGGAATGCTAAGGCCGAGGGGAACCGGCACGAGGAAGCCAAATGGGCCAATGTAATCGGCAATATCCTGAAGAACAGAGGAGAATACGTAAAAGCCCTAAAGTGGTTTCGGATTGATTACGATGTGTCGGTTAAATACTTACCTCAGAAGCATATGCTGGCAACGTGCCAGTCCCTGGGCGAGGTCTATCTTAGGCTCGAACACTTTAAAGATGCTTTAATTTATCAGAAGAAACATTTAGAGCTAGCCAAAAATGCTAATGACCTCGTGGAACAGCAAAGGGCTAACACTCAACTGGGTCGTACTTACCATGAGCTATTTTTGAAATCTGATGATGATCATTTTTCAGTGAGAAATGCCAAAAAGTATTTCAAGGCTGCCATGGAACTAGCAAAGTTTCTGAAAGATCACCCACCAAAAGTTGGATGTTCATTTCTCAAGGAATATATTGATGCTCATAATAATTTGGGAATGCTTGAAATGGATCTTGATAACTTGGAAGAGGCCAAAAAGATCTTAACGAAAGGACTAGTGATTTGTGAGGAAGAAGAGGTGGATGAGGATGATGATGGTCGTAGCAGGCTCCATCACAACCTTGGAAGTGTATATATGGAGCTAAGAATGTGGGATCAAGCTAAGAAGCATGTTGAGAAGGACATTATAATCTGTAAGAATATTGGGCATTGCCAAGGAGAGGCTAAAGGATACATTAACCTTGGTGAACTGCATTACAGGCTTCAAAAGTATGACGAAGCAATTCATTGCTATCGGAAGGCTCTTCATTTGGCAAAATCAATGGAAGATGAGGATGCTTTGGCTAGGCAAATTGATCAGAATATCAATACCGTTAAAGAAGCTACACAAGTGATGGTTGAACTAAGAAAAGAAGAGCAGAATCTTAAGAAGCTAATGAGAGAAATGCTCACTGCTAGAGGCACACCTCGTGAGCGCAAATGTCTACTGCAGCAAAATGCTTCTCTTGATTGCTTAATTGAAAAATCAAGTACGATTTTTGCATGGATGCAGGGACAAGCACTGGCCAAGATTAATATTGGTGATGTTTATGACTGTGATGGTAACTGGACAGAGGCACTAGATGCCTTTGAGGAGAGTTACAGGATTGCTGTTGAGGCTAAACTTCCTTCCGTCCAGCTTTCAGCACTGGAGAATATGCATTATAGCCACATGATAAGATTTGATAATGTAGAAGAAGCTAGGCGGTTACAGTCTCAAATTGACCAATTGAAGGAGAAAACGAAAATTGGTAATGAGACAAAATCTGTGGCGAAGGATTGCTGCTCTGAAACTGATACAGAAGCAAACGAGGCTCTCTCAGATAGTCCATCCGATGAGTGCTCCTTGTCAGAAACTAGAAAATCTTGTAAAGGCAGATTTAATTCGTCAAAATCTTTAGCTGATTTAGAAGAGCCAAATGACGCAGTTACTTTTACTTCATCCCTCAAGCGGCATGAAAGGTCACCTAAAATCAAATCATTTGACATGGAAAAATCCAATGCTTTTTCTGACCCATCTGAAATTTCACCTAAAAGTTTTTCTAAGTCAGCTGGTAGCCAACAGACAACCATTGGTCGTAAACGTGTTCGTGTGATTCTTTCTGATGATGATGAAGGTGAGGGTGAAATGATGGATTTCTCGAAATCAAGGCCTCATTTACGCCGGGGAGAGAATTCTGCTATTTCTGATGACAACAAGAATAAACAATGCTCAGGAAATCTTGCAGCTGAAATTAAGGAGGGTTCAACAACAACCAGTAAACATGCAAGCAGGTCTTGCGAAGACATTGAAGAAAGCACCGGTTCACATAAATATAAGAGTCGAATCATTGTGACTCAAAATGATAACATTTTTGGAACCCCAAAAGCTGATGAAATTCCTTCTGATTCTGCTGCTAGTGGCTCAAAATTTGAAGTTAACATCTCTGAAAATCTGTTGCATAAATATAATGCTACCAAGTCGAATGCTTCTGAGCAGGGTGAATGTGTTACATTCAAACTTGATAATGACCTGATACAGATAGAGGTTGCCTTATTTAGCGATATGCTAAGCATTGAATCTGCAAAGGAAGAACTAGCATGCATGTACTATCTACAACTTCCTTTTGAAAAGAGATCAGAGGGATGGGTTTCAAAACCCTTGATAAAACTCTATATTGACTACTGCAAGGAGTTATCCGAGACACCTAACATGAAGCTGCTGAAGAAACTGTACAATCTGGAGGCTTCAGATGATGAGATTGCAGTGTCTGATTGTGATTTGCAAGACTTATCTATAAGTCCGTTGTTGAATGCACTGCACACCCAGAAAACTTTTGCCATCTTAGACCTTTCTCACAATTTCTTAGGAAATGGAACGATGGAGAAAATTCAGCAGGTCTTCAAGCAGTCCAGCCAGACACATGACTTAACGTTAGATTTACACTGCAATCGATTTGGTCCAACTGCTTTATTCCAGATTTGTGAATGCCCTATTCTGTTCGCTCGATTGGAAGTGCTTAACGTATCTGGGAATCGCCTTACTGATGCTTGTGGGTCATACCTGTCAACTATCTTAAAAAATTGCAAAGGTCTTTGGAGCTTGAACATTGAACGATGTTCCATCACATCAAGAACAATTCAGAAGGTTGCTGATGCATTGGAAGTTGGAGCATCCCTGGAAAAACTTTATATAGGATACAACAACTCAATCTCTGGAAATGCCCTCAGTAGTTTATTCGTCAAGCTCACAGTACTGAATAGGTTTACAAGTCTTAGTCTAACTGGTTTGAAGTTGAGCAAGCCTGTTATGGAAGGCCTTCTCCAGCTTGTTAAATCCTTGGGTTTGTCTGGATTAATGCTTGGGGGCACTGGCATTGGAGATGACGCTGCATTAGGGATCACCGAGTCATTTAGTGGAAGTGAAGAGCTTGTGAAACTTGACTTAGCTTATTGTGGACTGACATCCAAGTACCTTGTTAAATTTGGTGGTTGCATTTCTATTATACAGCGCATTCATGAGCTGAGCCTTGCTGGGAATGCCATCATACAAGAGGGTTGTAATGCAGTATCGTCACTGATAGCTAACCCTCAATGTGGCATTAAAATCTTGGCTCTCAACAAGTGTCAGCTTGGCCTAGCTGGAGTTGTTCAAATCATTCAGGCTGTAGCAGGTAATCACTGTCTTGAAGAGCTCAATCTTGCTGATAATGTTGATCTCGATAAACATGCTCTGCAATGTAACACAATAGAGAAAGAAAATAAAGAACTTATACAACCGTGCCATGATATATCTAAGCCTCATGGCCTAACATGTTCAATCAAGGAGTTAGACCCCGCTCAACAGAATTTAGAGGAGGTAAACACTGAATACAATCAGCTTGAAGTTGCTGATAGTGAAGAACCAATTAAAGAAGCTGCAGCATCTGGTATCGATGATAGTTGTGCAAGTTCATGTGAAAGAAAATCCGCATCCCTTGATTGTCAGACTATTTTATCACTTTCAACTGCAATTGGGATGGCAAGGACATTGCAATTACTGGATCTTAGCAATAATGGATTTTCTGCCCAAGAGACTGAAACAATATTTGGTGCATGGTCAACTTCGAGAACTGATTTGGCCCAAAGACATATTAAGGACACCATAGTACATCTTTTTGTAAAGGGAACGAAGTGTTGTGTGAGACCTTGCTGCAAGAAGGATTAA 3744 40.68 MTRDGVQFEAAKRSYRNAKAEGNRHEEAKWANVIGNILKNRGEYVKALKWFRIDYDVSVKYLPQKHMLATCQSLGEVYLRLEHFKDALIYQKKHLELAKNANDLVEQQRANTQLGRTYHELFLKSDDDHFSVRNAKKYFKAAMELAKFLKDHPPKVGCSFLKEYIDAHNNLGMLEMDLDNLEEAKKILTKGLVICEEEEVDEDDDGRSRLHHNLGSVYMELRMWDQAKKHVEKDIIICKNIGHCQGEAKGYINLGELHYRLQKYDEAIHCYRKALHLAKSMEDEDALARQIDQNINTVKEATQVMVELRKEEQNLKKLMREMLTARGTPRERKCLLQQNASLDCLIEKSSTIFAWMQGQALAKINIGDVYDCDGNWTEALDAFEESYRIAVEAKLPSVQLSALENMHYSHMIRFDNVEEARRLQSQIDQLKEKTKIGNETKSVAKDCCSETDTEANEALSDSPSDECSLSETRKSCKGRFNSSKSLADLEEPNDAVTFTSSLKRHERSPKIKSFDMEKSNAFSDPSEISPKSFSKSAGSQQTTIGRKRVRVILSDDDEGEGEMMDFSKSRPHLRRGENSAISDDNKNKQCSGNLAAEIKEGSTTTSKHASRSCEDIEESTGSHKYKSRIIVTQNDNIFGTPKADEIPSDSAASGSKFEVNISENLLHKYNATKSNASEQGECVTFKLDNDLIQIEVALFSDMLSIESAKEELACMYYLQLPFEKRSEGWVSKPLIKLYIDYCKELSETPNMKLLKKLYNLEASDDEIAVSDCDLQDLSISPLLNALHTQKTFAILDLSHNFLGNGTMEKIQQVFKQSSQTHDLTLDLHCNRFGPTALFQICECPILFARLEVLNVSGNRLTDACGSYLSTILKNCKGLWSLNIERCSITSRTIQKVADALEVGASLEKLYIGYNNSISGNALSSLFVKLTVLNRFTSLSLTGLKLSKPVMEGLLQLVKSLGLSGLMLGGTGIGDDAALGITESFSGSEELVKLDLAYCGLTSKYLVKFGGCISIIQRIHELSLAGNAIIQEGCNAVSSLIANPQCGIKILALNKCQLGLAGVVQIIQAVAGNHCLEELNLADNVDLDKHALQCNTIEKENKELIQPCHDISKPHGLTCSIKELDPAQQNLEEVNTEYNQLEVADSEEPIKEAAASGIDDSCASSCERKSASLDCQTILSLSTAIGMARTLQLLDLSNNGFSAQETETIFGAWSTSRTDLAQRHIKDTIVHLFVKGTKCCVRPCCKKD 1247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9487940 9502162 + Lsi01G011350.1 Lsi01g01135 653793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01135 1247 MobiDBLite consensus disorder prediction 583 609 - -
Lsi01g01135 1247 SUPERFAMILY TPR-like 160 431 IPR011990 GO:0005515
Lsi01g01135 1247 Pfam Tetratricopeptide repeat 208 279 - -
Lsi01g01135 1247 Coils Coil 1123 1143 - -
Lsi01g01135 1247 Coils Coil 164 198 - -
Lsi01g01135 1247 ProSiteProfiles TPR repeat region circular profile. 248 277 - -
Lsi01g01135 1247 SUPERFAMILY RNI-like 754 1210 - -
Lsi01g01135 1247 PANTHER PROTEIN TONSOKU 356 728 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Lsi01g01135 1247 PANTHER PROTEIN TONSOKU 727 1247 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Lsi01g01135 1247 PANTHER PROTEIN TONSOKU 1 356 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Lsi01g01135 1247 Pfam Tetratricopeptide repeat 166 192 IPR019734 GO:0005515
Lsi01g01135 1247 Gene3D Ribonuclease Inhibitor 741 1239 IPR032675 -
Lsi01g01135 1247 SUPERFAMILY TPR-like 11 122 IPR011990 GO:0005515
Lsi01g01135 1247 MobiDBLite consensus disorder prediction 498 618 - -
Lsi01g01135 1247 MobiDBLite consensus disorder prediction 454 473 - -
Lsi01g01135 1247 SMART LRR_RI_2 789 816 - -
Lsi01g01135 1247 SMART LRR_RI_2 1044 1071 - -
Lsi01g01135 1247 SMART LRR_RI_2 1015 1042 - -
Lsi01g01135 1247 SMART LRR_RI_2 847 874 - -
Lsi01g01135 1247 Gene3D Tetratricopeptide repeat domain 198 432 IPR011990 GO:0005515
Lsi01g01135 1247 MobiDBLite consensus disorder prediction 549 582 - -
Lsi01g01135 1247 MobiDBLite consensus disorder prediction 500 514 - -
Lsi01g01135 1247 ProSiteProfiles TPR repeat profile. 248 281 IPR019734 GO:0005515
Lsi01g01135 1247 SMART tpr_5 28 61 IPR019734 GO:0005515
Lsi01g01135 1247 SMART tpr_5 68 101 IPR019734 GO:0005515
Lsi01g01135 1247 SMART tpr_5 165 198 IPR019734 GO:0005515
Lsi01g01135 1247 SMART tpr_5 208 241 IPR019734 GO:0005515
Lsi01g01135 1247 SMART tpr_5 360 393 IPR019734 GO:0005515
Lsi01g01135 1247 SMART tpr_5 248 281 IPR019734 GO:0005515
Lsi01g01135 1247 Coils Coil 291 328 - -
Lsi01g01135 1247 MobiDBLite consensus disorder prediction 519 547 - -
Lsi01g01135 1247 Gene3D Tetratricopeptide repeat domain 7 156 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01135 - - - bhj:120073724 2249.55
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1265 Blo04g00969 . . . Bpe15g00397 . . . . . Cma03g01081 . Car03g00971 . Sed10g0490 . Cpe10g00348 Bhi03g01379 Tan03g1329 Cmetu08g0165 . Hepe04g1126 . . Cla01g01530 Cam01g1598 Cec04g1243 Cco04g1312 Clacu01g1623 Cmu01g1509 Cre04g1188 . . . . Lsi01g01135 . . Cme08g01069 . . . Bda14g01059 . . Bma03g01034 . . Cmo03g01070 . . . . . . . . . . . . . . . . . . . . . . Csa06g02797 Chy02g01038 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011042 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01135 Lsi_Chr01 FPKM 66.393166 63.261696 52.088554 46.636131 31.445808 31.204084 31.012362 55.667469 59.658997 65.176544