Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01136 ATGGTGAGAGATGACTTATGTATTACAATTCCGAGCGATTTCAGATGTCCGATCTCGCTAGACGTCATGAAATCCCCTGTAAGTTTATGTACCGGAGTGACTTACGACCGTTCCAGTATCCAGAAATGGCTTGATAATGGAAACAACACTTGTCCGGCCACCATGCAGGTCCTTCAAACCAAGGAGTTCGTTCCCAACCACAATCTCCACCGCCTCATTCAGATTTGGTCTGATTCCCTTCGCCAACGCCTCCACTCCCCTGTTTCCGACTCTGCTCTCTCCTCCGATCAAGTTCTCCGCCTCGTCAACCGTATGGAGGACGATCAATCACGCGCTGATTCTCTTCCTCGGCTTGTCTCTTTCGCTTCCGAATCGGTGGAGAATCGGAGGCTTCTCTGCAGAATTGACGGCCTCGTGCCGGTACTTGTCGATCTTCTTAGCAATGTCGATGGCGGCGTTTTGGTTGAGCAAACGGTGAGGTTGTTGCATTTGATTCGGAGTGAGATAGAGGATAAGGAGCGGTTTGTGAAGACGATGTTGAAAAGTGATCGTAATTGTATTTCTTCTCTGCTTCTGATTCTGCGGAAAGGAACCGTCGAATTGAAAATCTGTTCCGCTAATCTGTTGGAGTATCTCGCAATCGACGCCGAAGCGAAGATTGTAATTGCAGAAACGGATGGATTGATGCAAGAATTACTGAAATTAATCAATTCTCAGAACGATACAAACCTAATCGAATCCGTTCTATCATGCGTAATTTCGATTTCAATGCCGAAACGGATCAAAATCAAATTAGTCCAACTCGGAGTAATAAAATCGGTAACGAAGCTTCTCTCGGAATCGAACTCGAGTTCAAGCATTTCGATAACGGAGAAGGTTCTGAAAGTACTGGAAACGGCGTCGACGGTGAGAGAAGGTAGGACAGAGATCGGAGAGGACTCGGTATGCGTAGCAGCGATAGTACAGAAGGTGCTGAAGGTATCAAACACGGCGACAGAGCACGCGGTGACGACGCTGTGGAGCGTTTGTTATCTGTTCAGAGACGAGAAGGCGGCGGAGGCGTTGACGAAGGCGAACGGATTGACGAAGATTTTGCTGTTAATGCAAAGCAATTGTTCGGCGCCGGTGCGGCAGATGGCGAGAGATCTGTTGAAGATTTTTCGAATCAATTCAAAATCGTGCCTATCGAGTTACGATACAAAAACTACGCATATCATGCCCTGTTAA 1227 47.27 MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLQTKEFVPNHNLHRLIQIWSDSLRQRLHSPVSDSALSSDQVLRLVNRMEDDQSRADSLPRLVSFASESVENRRLLCRIDGLVPVLVDLLSNVDGGVLVEQTVRLLHLIRSEIEDKERFVKTMLKSDRNCISSLLLILRKGTVELKICSANLLEYLAIDAEAKIVIAETDGLMQELLKLINSQNDTNLIESVLSCVISISMPKRIKIKLVQLGVIKSVTKLLSESNSSSSISITEKVLKVLETASTVREGRTEIGEDSVCVAAIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTKANGLTKILLLMQSNCSAPVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9537778 9539004 + Lsi01G011360.1 Lsi01g01136 653794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01136 408 Gene3D - 85 400 IPR011989 -
Lsi01g01136 408 SUPERFAMILY ARM repeat 107 390 IPR016024 -
Lsi01g01136 408 SUPERFAMILY RING/U-box 6 79 - -
Lsi01g01136 408 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Lsi01g01136 408 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Lsi01g01136 408 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Lsi01g01136 408 CDD RING-Ubox_PUB 14 56 IPR045210 -
Lsi01g01136 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Lsi01g01136 408 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 408 - -
Lsi01g01136 408 PANTHER WDSAM1 PROTEIN 4 408 IPR045185 GO:0061630
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01136 Lsi10g00713 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01136 Lsi-Chr1:9537778 Lsi04g00991 Lsi-Chr4:10800605 2.70E-41 dispersed
Lsi10g00743 Lsi-Chr10:10260504 Lsi01g01136 Lsi-Chr1:9537778 1.61E-35 transposed
Lsi01g01136 Lsi-Chr1:9537778 Lsi10g00713 Lsi-Chr10:9983755 2.76E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01136 - - cmax:111478747 704.901