Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01136 ATGGTGAGAGATGACTTATGTATTACAATTCCGAGCGATTTCAGATGTCCGATCTCGCTAGACGTCATGAAATCCCCTGTAAGTTTATGTACCGGAGTGACTTACGACCGTTCCAGTATCCAGAAATGGCTTGATAATGGAAACAACACTTGTCCGGCCACCATGCAGGTCCTTCAAACCAAGGAGTTCGTTCCCAACCACAATCTCCACCGCCTCATTCAGATTTGGTCTGATTCCCTTCGCCAACGCCTCCACTCCCCTGTTTCCGACTCTGCTCTCTCCTCCGATCAAGTTCTCCGCCTCGTCAACCGTATGGAGGACGATCAATCACGCGCTGATTCTCTTCCTCGGCTTGTCTCTTTCGCTTCCGAATCGGTGGAGAATCGGAGGCTTCTCTGCAGAATTGACGGCCTCGTGCCGGTACTTGTCGATCTTCTTAGCAATGTCGATGGCGGCGTTTTGGTTGAGCAAACGGTGAGGTTGTTGCATTTGATTCGGAGTGAGATAGAGGATAAGGAGCGGTTTGTGAAGACGATGTTGAAAAGTGATCGTAATTGTATTTCTTCTCTGCTTCTGATTCTGCGGAAAGGAACCGTCGAATTGAAAATCTGTTCCGCTAATCTGTTGGAGTATCTCGCAATCGACGCCGAAGCGAAGATTGTAATTGCAGAAACGGATGGATTGATGCAAGAATTACTGAAATTAATCAATTCTCAGAACGATACAAACCTAATCGAATCCGTTCTATCATGCGTAATTTCGATTTCAATGCCGAAACGGATCAAAATCAAATTAGTCCAACTCGGAGTAATAAAATCGGTAACGAAGCTTCTCTCGGAATCGAACTCGAGTTCAAGCATTTCGATAACGGAGAAGGTTCTGAAAGTACTGGAAACGGCGTCGACGGTGAGAGAAGGTAGGACAGAGATCGGAGAGGACTCGGTATGCGTAGCAGCGATAGTACAGAAGGTGCTGAAGGTATCAAACACGGCGACAGAGCACGCGGTGACGACGCTGTGGAGCGTTTGTTATCTGTTCAGAGACGAGAAGGCGGCGGAGGCGTTGACGAAGGCGAACGGATTGACGAAGATTTTGCTGTTAATGCAAAGCAATTGTTCGGCGCCGGTGCGGCAGATGGCGAGAGATCTGTTGAAGATTTTTCGAATCAATTCAAAATCGTGCCTATCGAGTTACGATACAAAAACTACGCATATCATGCCCTGTTAA 1227 47.27 MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLQTKEFVPNHNLHRLIQIWSDSLRQRLHSPVSDSALSSDQVLRLVNRMEDDQSRADSLPRLVSFASESVENRRLLCRIDGLVPVLVDLLSNVDGGVLVEQTVRLLHLIRSEIEDKERFVKTMLKSDRNCISSLLLILRKGTVELKICSANLLEYLAIDAEAKIVIAETDGLMQELLKLINSQNDTNLIESVLSCVISISMPKRIKIKLVQLGVIKSVTKLLSESNSSSSISITEKVLKVLETASTVREGRTEIGEDSVCVAAIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTKANGLTKILLLMQSNCSAPVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9537778 9539004 + Lsi01G011360.1 Lsi01g01136 653794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01136 408 Gene3D - 85 400 IPR011989 -
Lsi01g01136 408 SUPERFAMILY ARM repeat 107 390 IPR016024 -
Lsi01g01136 408 SUPERFAMILY RING/U-box 6 79 - -
Lsi01g01136 408 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Lsi01g01136 408 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Lsi01g01136 408 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Lsi01g01136 408 CDD RING-Ubox_PUB 14 56 IPR045210 -
Lsi01g01136 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Lsi01g01136 408 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 408 - -
Lsi01g01136 408 PANTHER WDSAM1 PROTEIN 4 408 IPR045185 GO:0061630
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01136 - - - cmax:111478747 704.901
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g01136 Lsi10g00713 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01136 Lsi-Chr1:9537778 Lsi04g00991 Lsi-Chr4:10800605 2.70E-41 dispersed
Lsi10g00743 Lsi-Chr10:10260504 Lsi01g01136 Lsi-Chr1:9537778 1.61E-35 transposed
Lsi01g01136 Lsi-Chr1:9537778 Lsi10g00713 Lsi-Chr10:9983755 2.76E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1266 . . Bda04g00334 . . . . . Cmo02g00625 . Cma03g01083 Cma07g00789 Car03g00973 Car07g00775 Sed10g0492 Cpe19g00539 Cpe10g00346 Bhi03g01378 Tan03g1327 Cmetu08g0065 . Hepe04g1125 . . Cla01g01528 Cam01g1597 Cec04g1242 Cco04g1311 Clacu01g1622 Cmu01g1508 Cre04g1187 . . Cone6ag1295 . Lsi01g01136 . . Cme08g01071 . . . . . Bpe06g00274 . . . . Cmo07g00812 . . . . Cpe05g01067 . Bhi10g02332 Tan07g0873 Cmetu11g1820 . Hepe08g1253 . . Cla02g00066 Cam02g0068 Cec02g0070 Cco02g0063 Clacu02g0067 Cmu02g0066 Cre02g0405 Lsi10g00713 Csa06g02795 Chy02g01040 Cme11g00070
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01518 . 1 1097 U-box Gene Family AT5G15400 70.7 0.0e+00 1494.2
Lsi10g00540 . 168 756 U-box Gene Family AT2G23140 64.5 4.3e-114 409.1
Lsi08g01601 . 1 779 U-box Gene Family AT1G24330 59.2 8.5e-242 833.6
Lsi04g00666 . 45 799 U-box Gene Family AT1G24330 57.9 4.1e-228 788.1
Lsi08g01601 . 1 778 U-box Gene Family AT1G67530 59.9 2.1e-240 828.9
Lsi04g00666 . 45 800 U-box Gene Family AT1G67530 56.8 1.8e-223 772.7
Lsi01g00373 . 1 362 U-box Gene Family AT4G21350 61.5 4.4e-119 424.9
Lsi05g01140 . 135 460 U-box Gene Family AT3G07360 55.3 4.9e-82 301.6
Lsi04g01143 CCT 260 419 U-box Gene Family AT1G71020 72.0 3.5e-60 229.6
Lsi04g00088 . 213 414 U-box Gene Family AT1G71020 51.2 4.4e-47 186.0
Lsi10g01368 . 305 474 U-box Gene Family AT1G71020 56.2 8.4e-46 181.8
Lsi02g01363 . 288 481 U-box Gene Family AT1G71020 50.8 6.0e-44 175.6
Lsi04g01143 CCT 16 623 U-box Gene Family AT1G23030 55.4 2.3e-96 350.1
Lsi10g01368 . 143 684 U-box Gene Family AT2G28830 51.0 5.5e-100 362.1
Lsi02g01363 . 117 689 U-box Gene Family AT2G28830 56.9 6.0e-99 358.6
Lsi02g01363 . 16 720 U-box Gene Family AT3G46510 64.3 1.1e-160 563.9
Lsi10g01368 . 3 687 U-box Gene Family AT3G46510 62.2 4.4e-154 542.0
Lsi04g00088 . 9 623 U-box Gene Family AT3G46510 58.1 4.0e-123 439.1
Lsi04g00088 . 10 625 U-box Gene Family AT3G54850 68.7 1.3e-166 583.6
Lsi10g01368 . 13 677 U-box Gene Family AT3G54850 53.4 2.8e-110 396.4
Lsi02g01363 . 23 681 U-box Gene Family AT3G54850 52.6 5.2e-96 349.0
Lsi10g00826 . 93 648 U-box Gene Family AT5G42340 64.0 1.1e-115 414.5
Lsi01g01607 . 9 669 U-box Gene Family AT5G01830 57.4 1.1e-197 686.8
Lsi02g00832 . 1 714 U-box Gene Family AT1G29340 65.9 4.4e-248 854.4
Lsi05g00339 . 27 435 U-box Gene Family AT5G37490 50.5 4.5e-107 385.2
Lsi10g01136 . 10 410 U-box Gene Family AT3G52450 50.9 3.7e-117 418.7
Lsi03g01816 . 1 404 U-box Gene Family AT3G52450 50.6 1.0e-114 410.6
Lsi01g01651 . 14 155 U-box Gene Family AT3G52450 57.7 4.9e-45 179.1
Lsi03g01816 . 1 403 U-box Gene Family AT2G35930 54.5 1.7e-119 426.4
Lsi10g01136 . 10 409 U-box Gene Family AT2G35930 52.3 1.3e-116 416.8
Lsi01g01651 . 14 158 U-box Gene Family AT2G35930 56.6 1.4e-46 184.1
Lsi05g00219 . 9 424 U-box Gene Family AT3G19380 64.2 2.8e-146 515.4
Lsi05g00219 . 1 424 U-box Gene Family AT1G49780 64.6 4.5e-152 534.6
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G64660 53.9 1.4e-121 433.3
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G09800 50.8 3.6e-106 382.1
Lsi04g01467 CCT 1 454 U-box Gene Family AT3G49810 63.5 2.4e-156 548.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT3G49810 61.5 5.8e-150 527.7
Lsi04g01467 CCT 1 454 U-box Gene Family AT5G65920 62.4 2.6e-150 528.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT5G65920 62.3 6.3e-149 524.2
Lsi05g01216 . 2172 2672 U-box Gene Family AT3G49060 50.2 7.4e-137 485.0
Lsi05g02044 CCT 1 880 U-box Gene Family AT2G45910 50.2 2.5e-223 772.3
Lsi09g00480 . 22 822 U-box Gene Family AT4G25160 51.9 1.3e-214 743.4
Lsi02g01538 . 1 548 U-box Gene Family AT5G40140 53.8 2.7e-96 349.7
Lsi08g00778 . 4 813 U-box Gene Family AT1G76390 60.8 1.1e-268 922.9
Lsi08g00778 . 13 813 U-box Gene Family AT1G20780 61.8 2.4e-279 958.4
Lsi08g01601 . 1 780 U-box Gene Family AT1G27910 62.0 1.2e-264 909.4
Lsi04g00666 . 45 811 U-box Gene Family AT1G27910 62.7 1.5e-262 902.5
Lsi01g00896 . 672 1220 U-box Gene Family AT5G67530 73.8 1.6e-235 812.4
Lsi03g01872 . 12 162 U-box Gene Family AT5G67530 50.3 9.1e-42 168.7
Lsi01g00816 . 6 802 U-box Gene Family AT5G65500 50.2 1.3e-208 723.4
Lsi05g01766 . 1 517 U-box Gene Family AT1G04510 74.4 6.6e-222 766.9
Lsi05g01766 . 1 486 U-box Gene Family AT2G33340 73.6 4.6e-209 724.2
Lsi05g01139 . 9 150 U-box Gene Family AT3G07370 59.2 5.2e-40 161.8
Lsi03g01518 . 1 1097 U-box Gene Family AT5G15400 70.7 0.0e+00 1494.2
Lsi10g00540 . 168 756 U-box Gene Family AT2G23140 64.5 4.3e-114 409.1
Lsi08g01601 . 1 779 U-box Gene Family AT1G24330 59.2 8.5e-242 833.6
Lsi04g00666 . 45 799 U-box Gene Family AT1G24330 57.9 4.1e-228 788.1
Lsi08g01601 . 1 778 U-box Gene Family AT1G67530 59.9 2.1e-240 828.9
Lsi04g00666 . 45 800 U-box Gene Family AT1G67530 56.8 1.8e-223 772.7
Lsi01g00373 . 1 362 U-box Gene Family AT4G21350 61.5 4.4e-119 424.9
Lsi05g01140 . 135 460 U-box Gene Family AT3G07360 55.3 4.9e-82 301.6
Lsi04g01143 CCT 260 419 U-box Gene Family AT1G71020 72.0 3.5e-60 229.6
Lsi04g00088 . 213 414 U-box Gene Family AT1G71020 51.2 4.4e-47 186.0
Lsi10g01368 . 305 474 U-box Gene Family AT1G71020 56.2 8.4e-46 181.8
Lsi02g01363 . 288 481 U-box Gene Family AT1G71020 50.8 6.0e-44 175.6
Lsi04g01143 CCT 16 623 U-box Gene Family AT1G23030 55.4 2.3e-96 350.1
Lsi10g01368 . 143 684 U-box Gene Family AT2G28830 51.0 5.5e-100 362.1
Lsi02g01363 . 117 689 U-box Gene Family AT2G28830 56.9 6.0e-99 358.6
Lsi02g01363 . 16 720 U-box Gene Family AT3G46510 64.3 1.1e-160 563.9
Lsi10g01368 . 3 687 U-box Gene Family AT3G46510 62.2 4.4e-154 542.0
Lsi04g00088 . 9 623 U-box Gene Family AT3G46510 58.1 4.0e-123 439.1
Lsi04g00088 . 10 625 U-box Gene Family AT3G54850 68.7 1.3e-166 583.6
Lsi10g01368 . 13 677 U-box Gene Family AT3G54850 53.4 2.8e-110 396.4
Lsi02g01363 . 23 681 U-box Gene Family AT3G54850 52.6 5.2e-96 349.0
Lsi10g00826 . 93 648 U-box Gene Family AT5G42340 64.0 1.1e-115 414.5
Lsi01g01607 . 9 669 U-box Gene Family AT5G01830 57.4 1.1e-197 686.8
Lsi02g00832 . 1 714 U-box Gene Family AT1G29340 65.9 4.4e-248 854.4
Lsi05g00339 . 27 435 U-box Gene Family AT5G37490 50.5 4.5e-107 385.2
Lsi10g01136 . 10 410 U-box Gene Family AT3G52450 50.9 3.7e-117 418.7
Lsi03g01816 . 1 404 U-box Gene Family AT3G52450 50.6 1.0e-114 410.6
Lsi01g01651 . 14 155 U-box Gene Family AT3G52450 57.7 4.9e-45 179.1
Lsi03g01816 . 1 403 U-box Gene Family AT2G35930 54.5 1.7e-119 426.4
Lsi10g01136 . 10 409 U-box Gene Family AT2G35930 52.3 1.3e-116 416.8
Lsi01g01651 . 14 158 U-box Gene Family AT2G35930 56.6 1.4e-46 184.1
Lsi05g00219 . 9 424 U-box Gene Family AT3G19380 64.2 2.8e-146 515.4
Lsi05g00219 . 1 424 U-box Gene Family AT1G49780 64.6 4.5e-152 534.6
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G64660 53.9 1.4e-121 433.3
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G09800 50.8 3.6e-106 382.1
Lsi04g01467 CCT 1 454 U-box Gene Family AT3G49810 63.5 2.4e-156 548.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT3G49810 61.5 5.8e-150 527.7
Lsi04g01467 CCT 1 454 U-box Gene Family AT5G65920 62.4 2.6e-150 528.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT5G65920 62.3 6.3e-149 524.2
Lsi05g01216 . 2172 2672 U-box Gene Family AT3G49060 50.2 7.4e-137 485.0
Lsi05g02044 CCT 1 880 U-box Gene Family AT2G45910 50.2 2.5e-223 772.3
Lsi09g00480 . 22 822 U-box Gene Family AT4G25160 51.9 1.3e-214 743.4
Lsi02g01538 . 1 548 U-box Gene Family AT5G40140 53.8 2.7e-96 349.7
Lsi08g00778 . 4 813 U-box Gene Family AT1G76390 60.8 1.1e-268 922.9
Lsi08g00778 . 13 813 U-box Gene Family AT1G20780 61.8 2.4e-279 958.4
Lsi08g01601 . 1 780 U-box Gene Family AT1G27910 62.0 1.2e-264 909.4
Lsi04g00666 . 45 811 U-box Gene Family AT1G27910 62.7 1.5e-262 902.5
Lsi01g00896 . 672 1220 U-box Gene Family AT5G67530 73.8 1.6e-235 812.4
Lsi03g01872 . 12 162 U-box Gene Family AT5G67530 50.3 9.1e-42 168.7
Lsi01g00816 . 6 802 U-box Gene Family AT5G65500 50.2 1.3e-208 723.4
Lsi05g01766 . 1 517 U-box Gene Family AT1G04510 74.4 6.6e-222 766.9
Lsi05g01766 . 1 486 U-box Gene Family AT2G33340 73.6 4.6e-209 724.2
Lsi05g01139 . 9 150 U-box Gene Family AT3G07370 59.2 5.2e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002606 1 2 1 0 1 2 3 2 2 1 2 2 3 2 2 2 2 4 3 2 2 3 2 3 2 2 2 1 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01136 Lsi_Chr01 FPKM 39.366665 41.970913 47.466492 45.784222 22.09473 21.07609 22.524691 19.95363 19.51376 21.367281