Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01138 ATGCTGAGCTCTGATGGAGACACAGATGTTTTCTTTGATTCAGAAGATTACTTGCCATTAGAGGAGTCCTTGGTAGCTGAAGAAGCGGATTTCAGCAAGTTGGGATATGAAATATGGATGAGTGAGCCTCAGAGCATTAAGAAGAGAAGGGAACGTTTTCTTCAAGAAGTTGGTTTGGTTGAATTTGCATCTTCTAGTACTTGTGCACAGGATTCAGAGATTGAATCTAGTAGTTCATCAGAGAGGATGGAATTGGAGAGACTTACAGAGTGTAGTGGAGCTGTTTCAAGCTCTGACTATACACCTAGCTGTAATGTGGAAGACAATGATTCAGTAGTATGCCACAATGAGATGCAAAGTGCTGAATTCAGCAATGAGGCAACCAGTCGACCATCTTCTGTTTCCAACTCCAGCTTTCAACGGTGCCATGGTGAAGCTAATGTTGAAGCTTGCCAGGATACTGATGTAGGTAAAAAGAAAATATTGACTTGGTGGAAATCATTTAAGAACAAGGCAGTAAGACGAAGGAGTACAGAGGTTTCTGGGGAATCAAAATCGAATCCAGCAGAATCCAAAAGTTGCAGAATTAAGGTGTACCAACACAAAAAGAGGTGTTCAGAATTTAGTGCAATGTATATGAGACAGCAGATTTGTGCACACAAGGGCTTGATTTGGACAATGAAGTTTAGTCCAGATGGCAAGTATTTGGCAAGCGGAGGAGAAGATGGAATTGTACGCATTTGGCGTGTTACATGTGCAAATGCCTCTAGTGAGTTTTTAGCAGATGATGAGAATTATAACACCAAACCAAGAGAAGGGAAGTCTAGTTTCAGCAGCAAACCATCAAAATTTGCCACTGTTGTCATTCCTGAAAACGTTTTTCAGATTGAGGAGTCGCCAATACAAGAATTCCATGGACATTCAAGTGATGTCTTGGACATAGCTTGGTCTAATTCAAATTGTCTTCTGTCATCCTCAAAGGATAAAACCGTGCGCTTGTGGCAAGTCGGTTCTGACCAATGTCTCAATATTTTTCTCCATAAAAACTATGGTAAGTTGTTAAGTTCTGCGTACGTTCAATCTTTTACTGGCTCTATTCTCTTTTCTAAATTGTTGTTATTTTCTCTATTGGGACCAGTGACTTGTATCCAATTCAATCCAATGGATGAAAACTACTTTGTCAGTGGCTCAATTGATGGCAAAATCCGGATTTGGGGTGTCAAGAAGCAGCGTGTAGTTGATTGGGCTGATATCCGAGATGTAATTACCGCTATATCTTATCGACCAGATGGGAAGGGATTTGCTGTTGGTTCTATTACCGGCACTTGTCGTTTCTATGAAACATCAGGTGATTATCTTCATCTGGATGCACAGATCAATGTTCAAGGTAGAAAAAAAGCCTCGGGCAAAAGGATCACTGGCATTCAGTTTTGCCGGGAAAATTCTCAAAGAGTGATGATAACTTCGGAAGACTCTAAAGTACGCATATTTGAAGGAACCGAAATCGTCAGCAAATACAAAGGTCTAACGAAGTCGGGGAGTCAAATGTCTGCTTCCTTTACGAAAAATGGGAAACATATAGTATCTGTCGGAGAGGACTCTCGTGTATATATGTGGAACTATGATAGCCTTCGCCTTCCGTCGATGAAAGAAACAAAATCTCAGCAGTCTTGTGAGCATTTCTTTTCTGATGGTGCGTCTGTTGCAATACCATGGCCTGGCATTGGAACTGAACCAAAGGGCTTCGGTAACAACCAACCACGGGTTTCATGTAGAAAGGATTACCAAAGGGCTGCTTCTTGGACAAGAGACTCAGAGCGTTTTTCGCTTGGTAATTGGTTCTCTTCCGAGGTTCTGCGCCGAGGTTCTGCAACATGGCCAGAAGAGAGACTACCTCTCTGGGATTTACCGATTGTAGAGGATGAACATGGCAACCTGCAACACCAAGATTGTCATCAAAAGACACTAAATGGTCATCGCAATGCCTACGACTATGGATCTCGGCTCGAAACGTGGGGCCTTGTGATCGTCGTGGCTGGATTAGATGGAACTATAAAGACATTCCACAATTATGGATTGCCGATCAAGCTTTAG 2094 42.17 MLSSDGDTDVFFDSEDYLPLEESLVAEEADFSKLGYEIWMSEPQSIKKRRERFLQEVGLVEFASSSTCAQDSEIESSSSSERMELERLTECSGAVSSSDYTPSCNVEDNDSVVCHNEMQSAEFSNEATSRPSSVSNSSFQRCHGEANVEACQDTDVGKKKILTWWKSFKNKAVRRRSTEVSGESKSNPAESKSCRIKVYQHKKRCSEFSAMYMRQQICAHKGLIWTMKFSPDGKYLASGGEDGIVRIWRVTCANASSEFLADDENYNTKPREGKSSFSSKPSKFATVVIPENVFQIEESPIQEFHGHSSDVLDIAWSNSNCLLSSSKDKTVRLWQVGSDQCLNIFLHKNYGKLLSSAYVQSFTGSILFSKLLLFSLLGPVTCIQFNPMDENYFVSGSIDGKIRIWGVKKQRVVDWADIRDVITAISYRPDGKGFAVGSITGTCRFYETSGDYLHLDAQINVQGRKKASGKRITGIQFCRENSQRVMITSEDSKVRIFEGTEIVSKYKGLTKSGSQMSASFTKNGKHIVSVGEDSRVYMWNYDSLRLPSMKETKSQQSCEHFFSDGASVAIPWPGIGTEPKGFGNNQPRVSCRKDYQRAASWTRDSERFSLGNWFSSEVLRRGSATWPEERLPLWDLPIVEDEHGNLQHQDCHQKTLNGHRNAYDYGSRLETWGLVIVVAGLDGTIKTFHNYGLPIKL 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9572277 9575564 + Lsi01G011380.1 Lsi01g01138 653796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01138 697 Gene3D - 201 568 IPR015943 GO:0005515
Lsi01g01138 697 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 415 IPR001680 GO:0005515
Lsi01g01138 697 SUPERFAMILY WD40 repeat-like 211 687 IPR036322 GO:0005515
Lsi01g01138 697 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 217 250 - -
Lsi01g01138 697 PRINTS G protein beta WD-40 repeat signature 322 336 IPR020472 -
Lsi01g01138 697 PRINTS G protein beta WD-40 repeat signature 236 250 IPR020472 -
Lsi01g01138 697 PRINTS G protein beta WD-40 repeat signature 393 407 IPR020472 -
Lsi01g01138 697 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 304 336 - -
Lsi01g01138 697 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 344 IPR001680 GO:0005515
Lsi01g01138 697 Pfam WD domain, G-beta repeat 379 405 IPR001680 GO:0005515
Lsi01g01138 697 Pfam WD domain, G-beta repeat 299 334 IPR001680 GO:0005515
Lsi01g01138 697 Pfam WD domain, G-beta repeat 219 248 IPR001680 GO:0005515
Lsi01g01138 697 SMART WD40_4 499 540 IPR001680 GO:0005515
Lsi01g01138 697 SMART WD40_4 210 249 IPR001680 GO:0005515
Lsi01g01138 697 SMART WD40_4 297 335 IPR001680 GO:0005515
Lsi01g01138 697 SMART WD40_4 458 498 IPR001680 GO:0005515
Lsi01g01138 697 SMART WD40_4 649 689 IPR001680 GO:0005515
Lsi01g01138 697 SMART WD40_4 408 447 IPR001680 GO:0005515
Lsi01g01138 697 SMART WD40_4 369 406 IPR001680 GO:0005515
Lsi01g01138 697 ProSiteProfiles Trp-Asp (WD) repeats profile. 217 258 IPR001680 GO:0005515
Lsi01g01138 697 PANTHER WD REPEAT DOMAIN 44 5 350 IPR040324 -
Lsi01g01138 697 PANTHER WD REPEAT DOMAIN 44 380 697 IPR040324 -
Lsi01g01138 697 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 5 350 - -
Lsi01g01138 697 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 380 697 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01138 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101207772 1161.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01138 Lsi-Chr1:9572277 Lsi09g00152 Lsi-Chr9:1590257 6.00E-112 dispersed
Lsi01g01138 Lsi-Chr1:9572277 Lsi02g02285 Lsi-Chr2:29422484 7.30E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1267 Blo04g00968 . . Bda10g00359 Bpe15g00398 . . . . . Cma03g01085 Cma07g00791 Car03g00975 Car07g00777 . . . Bhi03g01375 . . . Hepe04g1122 . . Cla01g01526 Cam01g1596 Cec04g1240 Cco04g1310 Clacu01g1620 Cmu01g1506 Cre04g1185 . . Cone6ag1293 . Lsi01g01138 . . Cme08g01072 . . . Bda14g01058 . Bpe06g00273 Bma03g01033 Bma06g00513 . Cmo03g01072 Cmo07g00814 . . . . . . . . . . . . . . . . . . . . . Csa06g02793 Chy02g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003346 3 4 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01138 Lsi_Chr01 FPKM 3.276134 4.35394 5.125594 4.988072 7.441942 9.656854 8.427197 8.709437 6.849428 8.414042