Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01139 ATGGCAATTCCCACTTCCCTCATTCCCACTTTGTCTTTCGATACTATCTCCAGCTCTGCTTCTTATTCTTCCTCCTCCTTTTCATTGCAATTTCTTAATCCCTTCAAACCCCATTGTCATGGTTTAAAGATGGATAATCCCACCTCAAATGGGTCGCTCGTTGTTAACTCTTCCGCTCGCGAAATGGGTTCCAACTCTGACCCTTTAAACCGGAGCCTGAAGCATCAAATATCATCTATTTCTCCTAGTGGGAGGACACTAAGTGAAGCTTCCATGTCCATGCCATCGTATAAATGGCGAAGAGTATTGCTTAAAGTAAGCGGTGAAGCACTTGCTGGTGATCGGTTGCAGAATATTGATCCAAAGGTTACTATGGCAATTGCGAGGGAGGTTGCAGCTGTTACCCGTCTGGGCATTGAGGTTGCTATAGTAGTTGGTGGGGGTAACATTTTCCGTGGATCCTCGTGGGCCGGATGTAGTGGTTTGGACCGATCATCTGCTGATTACATCGGGATGTTGGCAACAGTCATGAATGCTATATTTCTTCAAGCCACAATGGAGAGTATAGGCATTCCTACACGAGTGCAGACGGCGTTTCGCATGTCCGAGGTTGCAGAGCCTTATATTCGACGTAGGGCTGTGAGGCACTTGGAAAAAGGAAGAGTTGTGATCTTTGCAGCTGTTAATGCTGAAGTTCTGCTGAAAGCAACAAACGTTGACGGGGTTTATGACGATGATCCAAGGGAAAACCCAAATGCACGATTACTCGAGACTCTTACGTACCAGGAGGTGACTTCGAAGGACCTTTCGGTGATGGACATGACAGCCATTACTCTATGCCAGGAAAATAACATTCCTGTTGTTGTCTTCAATCTAACAAAACCAGACAACATCTCGAAAGCCATACAGGGCGAGAGAGTCGGGACGTTGATCGGAGGAACATGGAACTCAATGGTAGCAAGTAAATGA 969 46.13 MAIPTSLIPTLSFDTISSSASYSSSSFSLQFLNPFKPHCHGLKMDNPTSNGSLVVNSSAREMGSNSDPLNRSLKHQISSISPSGRTLSEASMSMPSYKWRRVLLKVSGEALAGDRLQNIDPKVTMAIAREVAAVTRLGIEVAIVVGGGNIFRGSSWAGCSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAVNAEVLLKATNVDGVYDDDPRENPNARLLETLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLTKPDNISKAIQGERVGTLIGGTWNSMVASK 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9578210 9581970 + Lsi01G011390.1 Lsi01g01139 653797

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01139 322 Hamap Uridylate kinase [pyrH]. 97 312 IPR015963 GO:0005737|GO:0006221|GO:0033862
Lsi01g01139 322 CDD AAK_UMPK-PyrH-Ec 100 312 IPR015963 GO:0005737|GO:0006221|GO:0033862
Lsi01g01139 322 Pfam Amino acid kinase family 101 225 IPR001048 -
Lsi01g01139 322 Pfam Amino acid kinase family 226 291 IPR001048 -
Lsi01g01139 322 Gene3D - 228 317 IPR036393 -
Lsi01g01139 322 Gene3D - 92 227 IPR036393 -
Lsi01g01139 322 PANTHER URIDYLATE KINASE 88 227 - -
Lsi01g01139 322 PANTHER URIDYLATE KINASE 227 314 - -
Lsi01g01139 322 SUPERFAMILY Carbamate kinase-like 97 311 IPR036393 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01139 K09903 pyrH; uridylate kinase [EC:2.7.4.22] - csv:101221565 555.058
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01139 Lsi-Chr1:9578210 Lsi03g01950 Lsi-Chr3:30891092 3.32E-69 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1268 . . . . . Bpe13g00023 . . . . . Cma07g00792 Car03g00976 Car07g00778 Sed10g0495 Cpe19g00537 Cpe10g00345 Bhi03g01373 Tan03g1322 Cmetu08g1743 . Hepe04g1121 . . Cla01g01525 Cam01g1595 Cec04g1239 Cco04g1309 Clacu01g1619 Cmu01g1505 Cre04g1184 . . Cone6ag1292 . Lsi01g01139 . . Cme08g01074 . . Bda11g01366 . . . . Bma06g00506 . . Cmo07g00815 . . . . . . . . . . . . . . . . . . . . . Csa06g02792 Chy02g01043 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007541 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01139 Lsi_Chr01 FPKM 2.926772 3.572478 12.222339 10.4733 72.428551 67.906151 74.594162 6.974103 6.886089 7.846404