Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01140 ATGACGAAGTTCAGAAAGCTTGGTCGACATACAAAACACCGGATGTCCATGCTGAGAACTATGGTTTCTCAGTTAGTGAAGCACGAACGCATTGAGACTACTGTTGCTAAGGCTAAAGAAGTTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAAGAGGAAGCAAATGATGGCATTGGGCACGGGCTTGATAAATATGCTTGCGGGAAGATTAGTTGGAACCATTTGGAAGTGAAGGAACAGTGGTGTGAGGGTACTCTTTGTGCTGCAAGGCGTGCTGCTGCATTTGTAAGAGGCGATGCTGTCCTTCACAAACTATTCACAGAAATGGCTTATCGATACAAAGATAGAGCTGGTGGATATACAAGATTTCTGCGGACTCGTATTCGTGTTGGTGATGCTGCACCAATGGCTTATATAGAATTTATTGATAGAGAAAATGAGCTCAGACAGTCAAAGCCTCCAAATCCTCCACCGCCTCAGAGGGCTCCATTAGATCCATGGACAAGATCACGACTTAGCAAACAGTTCGCACCACCCAAAGAGATCAAATCCAACTCCGGAATCTGA 573 45.03 MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEEANDGIGHGLDKYACGKISWNHLEVKEQWCEGTLCAARRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSNSGI 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9583611 9587817 + Lsi01G011400.1 Lsi01g01140 653798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01140 190 SUPERFAMILY Prokaryotic ribosomal protein L17 3 147 IPR036373 GO:0003735|GO:0005840|GO:0006412
Lsi01g01140 190 Gene3D Ribosomal protein L17 1 144 IPR036373 GO:0003735|GO:0005840|GO:0006412
Lsi01g01140 190 PANTHER RIBOSOMAL PROTEIN L17 84 187 IPR000456 GO:0003735|GO:0005840|GO:0006412
Lsi01g01140 190 PANTHER RIBOSOMAL PROTEIN L17 1 57 IPR000456 GO:0003735|GO:0005840|GO:0006412
Lsi01g01140 190 Pfam Ribosomal protein L17 17 144 IPR000456 GO:0003735|GO:0005840|GO:0006412
Lsi01g01140 190 MobiDBLite consensus disorder prediction 147 190 - -
Lsi01g01140 190 Hamap 50S ribosomal protein L17 [rplQ]. 2 144 IPR000456 GO:0003735|GO:0005840|GO:0006412
Lsi01g01140 190 PANTHER BNAA09G06940D PROTEIN 84 187 - -
Lsi01g01140 190 PANTHER BNAA09G06940D PROTEIN 1 57 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01140 K02879 RP-L17, MRPL17, rplQ; large subunit ribosomal protein L17 - csv:101221792 267.314
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01140 Lsi-Chr1:9583611 Lsi03g02295 Lsi-Chr3:33794563 8.04E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1276 . . . . . . . . . . Cma03g01087 . Car03g00977 . Sed14g0216 . . Bhi03g01372 Tan03g1320 Cmetu08g1085 . . . . Cla01g01524 Cam01g1594 Cec04g1238 Cco04g1308 . . Cre04g1183 . . . . Lsi01g01140 . . Cme08g01075 . . . . . . . . . Cmo03g01073 . . . . . . . . . . . . . . . . . . . . . . Csa06g02791 Chy02g01044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011921 1 1 1 3 1 1 2 1 1 1 1 0 0 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01140 Lsi_Chr01 FPKM 13.588183 16.446358 5.466436 6.212059 5.423746 4.519092 5.153891 10.023643 10.417758 10.345064