Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01144 ATGGACCCCCATCACCTCCCAAACCCCTCTTCTCATCTCAATCTCGATCGCTCCACCGTCATGGAAGACCACCATATCCTTCACCACGTCCCCGACCTCGATTCCATTTGGCCTTCAGTTTTGCCTTTCCAACTCCCCGACCCTCACGATCAACAACTGCCCTCCTCCTCCTCCACCCATCTGTTGATAGGCTACGGTACTCCGAGTTCTGGGACAGGTGATGATGAAGAGCCAGAAGAAGAGTTAGGTGCTATGAAAGAGATGATGTATAAGATTGCGGCAATGCAGCCAGTGGATATTGACCCTTCAACTATCCGAAAGCCTAAGCGACGAAACGTGCGGATTAGCGATGACCCGCAAAGCATCGCTGCTCGTCTCCGACGAGAGAGGATCAGTGAGAAAATCAGAATTCTTCAAAGGCTTGTGCCTGGAGGGACCAAGATGGACACAGCTTCAATGCTGGATGAAGCCATTCGCTATGTTAAGTTCTTGAAGAGACAAATCCGGTTACTGCAGTCAAATCAGCCGCCGCAACAGCCAACCACCAGCGGTGGAACCGCCGCTGGCGGCGGAGGAGGGTGGCCTTTTCCCTTCCATAAAGCTAATGGTTCAACCTCCTCGTCCACTTCAATGGAAACTACTCCGGCCATTACACCATCAGGATGGTGA 669 52.17 MDPHHLPNPSSHLNLDRSTVMEDHHILHHVPDLDSIWPSVLPFQLPDPHDQQLPSSSSTHLLIGYGTPSSGTGDDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSNQPPQQPTTSGGTAAGGGGGWPFPFHKANGSTSSSTSMETTPAITPSGW 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9621284 9622449 + Lsi01G011440.1 Lsi01g01144 653802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01144 222 CDD bHLH_AtIND_like 116 176 - -
Lsi01g01144 222 Coils Coil 154 174 - -
Lsi01g01144 222 Pfam Helix-loop-helix DNA-binding domain 124 164 IPR011598 GO:0046983
Lsi01g01144 222 MobiDBLite consensus disorder prediction 172 186 - -
Lsi01g01144 222 MobiDBLite consensus disorder prediction 49 66 - -
Lsi01g01144 222 MobiDBLite consensus disorder prediction 200 222 - -
Lsi01g01144 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 173 IPR036638 GO:0046983
Lsi01g01144 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 164 IPR011598 GO:0046983
Lsi01g01144 222 Gene3D - 118 182 IPR036638 GO:0046983
Lsi01g01144 222 SMART finulus 121 170 IPR011598 GO:0046983
Lsi01g01144 222 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 49 216 - -
Lsi01g01144 222 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 49 216 IPR045843 GO:0003700|GO:0006355
Lsi01g01144 222 MobiDBLite consensus disorder prediction 172 222 - -
Lsi01g01144 222 MobiDBLite consensus disorder prediction 48 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01144 Lsi-Chr1:9621284 Lsi10g00560 Lsi-Chr10:8215560 1.84E-46 dispersed
Lsi02g00992 Lsi-Chr2:10018956 Lsi01g01144 Lsi-Chr1:9621284 2.38E-14 dispersed
Lsi08g01006 Lsi-Chr8:18571531 Lsi01g01144 Lsi-Chr1:9621284 2.01E-06 dispersed
Lsi01g01144 Lsi-Chr1:9621284 Lsi08g01480 Lsi-Chr8:22953246 1.16E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24661 PF00010 HLH 1.30E-06 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01144 - - bhj:120073523 353.599