Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01145 ATGAAGGGTGGGACGCTTCAGATCAACTGGCACGACTCAAAGCCAGTGCTCACCCTAGATTTCCATCCACTTTCAGGTCTCCTCGCAACTGGCGGAGCCGATTTCGATATCAAGCTTTGGTTATTAAATTCAGGGGATGAACAGAAAAAGGTCCCCGGTGCTACGTATCAAAGCAGCCTTTCTTATCATGGTTCTGCTGTTAATAGCCTTCGCTTCTCACCTTCTGGAGAACAGCTTGCCTCTGGTGCCGATGGAGGTGAGCTTATCATATGGAAATTGCACCATTTGGAAAGTGGCCAGTCTTGGAAAGTCCTGAAGACATTATCATTTCACCGCAAGGATGTGCTGGACCTACAGTGGTCTCATGATGGTGCATATTTAATATCTGGATCCGTAGATAATTCTTGCATCATATGGGATGTAAGCAAAGGATCTGTCCATCAGATTTTAGATGCCCATTTGCACTATGTTCAAGGTGTGGCATTGGACCCGCTGGGAAAGTATGCTGCTTCTCTGAGTTCAGATAGAAGTTGCAGAATCTATGCCTATAAACCCCCAACCAAAGTTAAAAACAGTGAGAAAATGACTTATGTTTGTCAGCATGTCATTACTAAGGCTGAAAATGTTGCAGTTGATGATTCTAAGTCTGCCAGAAACCATCTCTTTCATGACGAGACATTGCCATCTTTCTTCCGAAGGTTGGCCTGGTCACCTGATGGATCTTTTCTACTTGTGCCTGCAGAATGGGATGGGCTAACTTTTGAAGATATGGCTTCAGTTGATTTGGTAAAATTTGAAGACACTCAGACAGAGTGGAACTTGTTTAATGATGGAACTGTGGGCTTATATCGATCAACTTTGGCAATGCCTGCTATTCAGCTCCCTGGTGCCAGCAAGCCGGTTGTAGCAGTGTGCTTTTGTCCAAAGCTTTTTAGACTTAGAGGATTAAATTCAGCTGGGTTCTTTAAGCTTCCACATCGGGTGATTTTTGCAGTAGTGACTTTAAATTCTTTGTACATATATGACACTGAAAGTGTTGTGCCACTAGCAATCATGGCTGGTCTTCACTATGCTGCCATAACAGATGTCGCGTGGTCGGCAGATGCTCATTATTTAGCACTATCTTCTCAAGATGGTTACTGCACTTTGGTGGAATTTGAAAATGATGAACTGGGATCACCACTCGCTCTATCAGAAGATAGAATATGCACGACGACAACCAAGCAGAACACGAGTTTAACAGATGTGGTGACTATAAACGACGATCAAAATAGGAAAACAGAAGCAGAAGGGAAACATGAAGAAAAGAAAAGCGTTGAAAAGCCAGAAAACATGGTGATTGAAAAAGCTTCTAGTGGAGACACTCTTGTTGAATCTGACTGCAGAGGACATGAAATTGAAAAGAAGGCAAGTAAACAGGTATCTATAAACTCTTCAAGCAACTCTGTTACCAGCAAGCCAGCCAAAAGGCGCATTACACCCATGGCTATTGATCCATGA 1500 43.13 MKGGTLQINWHDSKPVLTLDFHPLSGLLATGGADFDIKLWLLNSGDEQKKVPGATYQSSLSYHGSAVNSLRFSPSGEQLASGADGGELIIWKLHHLESGQSWKVLKTLSFHRKDVLDLQWSHDGAYLISGSVDNSCIIWDVSKGSVHQILDAHLHYVQGVALDPLGKYAASLSSDRSCRIYAYKPPTKVKNSEKMTYVCQHVITKAENVAVDDSKSARNHLFHDETLPSFFRRLAWSPDGSFLLVPAEWDGLTFEDMASVDLVKFEDTQTEWNLFNDGTVGLYRSTLAMPAIQLPGASKPVVAVCFCPKLFRLRGLNSAGFFKLPHRVIFAVVTLNSLYIYDTESVVPLAIMAGLHYAAITDVAWSADAHYLALSSQDGYCTLVEFENDELGSPLALSEDRICTTTTKQNTSLTDVVTINDDQNRKTEAEGKHEEKKSVEKPENMVIEKASSGDTLVESDCRGHEIEKKASKQVSINSSSNSVTSKPAKRRITPMAIDP 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9625359 9632625 + Lsi01G011450.1 Lsi01g01145 653803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01145 499 MobiDBLite consensus disorder prediction 466 499 - -
Lsi01g01145 499 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 453 - -
Lsi01g01145 499 SUPERFAMILY WD40 repeat-like 8 383 IPR036322 GO:0005515
Lsi01g01145 499 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 145 - -
Lsi01g01145 499 Gene3D - 4 267 IPR015943 GO:0005515
Lsi01g01145 499 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Lsi01g01145 499 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 453 IPR045145 GO:0006335
Lsi01g01145 499 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 93 IPR001680 GO:0005515
Lsi01g01145 499 Gene3D - 271 484 IPR015943 GO:0005515
Lsi01g01145 499 MobiDBLite consensus disorder prediction 472 488 - -
Lsi01g01145 499 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Lsi01g01145 499 Pfam WD domain, G-beta repeat 102 140 IPR001680 GO:0005515
Lsi01g01145 499 Pfam WD domain, G-beta repeat 11 40 IPR001680 GO:0005515
Lsi01g01145 499 Pfam WD domain, G-beta repeat 57 92 IPR001680 GO:0005515
Lsi01g01145 499 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 93 - -
Lsi01g01145 499 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Lsi01g01145 499 SMART WD40_4 53 92 IPR001680 GO:0005515
Lsi01g01145 499 SMART WD40_4 143 182 IPR001680 GO:0005515
Lsi01g01145 499 SMART WD40_4 345 385 IPR001680 GO:0005515
Lsi01g01145 499 SMART WD40_4 101 140 IPR001680 GO:0005515
Lsi01g01145 499 SMART WD40_4 3 41 IPR001680 GO:0005515
Lsi01g01145 499 MobiDBLite consensus disorder prediction 421 443 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01145 K10751 CHAF1B; chromatin assembly factor 1 subunit B - csv:101222502 824.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01145 Lsi-Chr1:9625359 Lsi10g01168 Lsi-Chr10:15957776 1.59E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1283 . . . . . . . . . . Cma03g01090 . Car03g00981 . Sed10g0499 . Cpe10g00342 Bhi03g01357 Tan03g1314 Cmetu08g0769 . Hepe04g1117 . . Cla01g01520 . . . . . . . . Cone6ag1289 . Lsi01g01145 . . Cme08g01079 . Blo06g00198 . . . . . . . Cmo03g01076 . . . . . . . . . . . . . . . . . . . . . . Csa06g02786 Chy02g01049 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011096 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01145 Lsi_Chr01 FPKM 72.728928 81.394897 0.0 0.0 0.0 0.0 0.0 3.643025 2.506354 3.23503