Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01147 ATGGAGTTGAAGGTGGAGAAACCCATGTGGAAAAAACCTGAAAATTTCGCCGGAGAAGCTTACACTAGCGACAGAGTGTATGCAGAGGCCGACGAAAAAGAGGCAGAAAGCGCGAGCATCGGAAGCTATGGAGTTTGTGGGCGGTCGAGGTCATTTCAGACGGTGGAGATGGACGGCGTCCCGTTTTCCGGTTGGGCGGAGGAAAGGCTGGCTTGGTTGCGTTCTCAGATTATAGGTGGAGAAGCAGATTTTGATTCTCCATTTGGAGAAAGAAGGCTGTGTTATGCTGATCATACAGCTTCTGGTCGTTCTCTTCGTTATATTGAAGATTTCATCCTCAGAAACGTTCTTCCATTTTATGGCAACACTCACACATGTGACAGCTACGTAGGACACCATACAACGAAGATGGTGAACGATGCAACTACGTACATCAAGAAGTGCTTAGGAGGTGGAGAAGAAGAAGTGCTTCTATTCTGTGGACAAGGCACAACTTCCGCCATTAAAAGACTGCAAGAAGTGATGGGCATTGCAGTGCCATCCATTCTGAGAGAGAGGGTAATAGAAACCCTAAAGGAAGAAGAAAGGTGGGTTGTTTTTGTTGGACCTTATGAGCATCACTCCAACCTCCTCTCATGGCGGCAGAGCTTGGCCGAAGTGATAGAAATTGGAATGGATGAGAATGGGCTTTTAGACATTGAGATGCTCAGATCACAGCTTGAGGAATATAAGAAAGCTGGAAATAGACCAATTTTGGGTTCTTTCTCCGCTTGTAGTAATGTTACAGGAGTTTATTCAGATACAAAGGCTATTGCTACACTGATTCATCAATATGGAGGCCATGTTTGCTTTGATTTTGCTGCAAGTGGTCCTTATGTGCAAATTGATATGCAACCAGGGGAAATTGACGGCTATGATGCGATTTTTCTAAGTACGCACAAGTTTCTTGGAGGGCCTGGATCACCTGGAATCCTACTGATGAACAAAAGTCTCTATAAGTTAAAATCATCTCCTCCATCAACTTGTGGGGGTGGCACTGTGAGCTATGTCAATGGCTTCAGTGAAAAGGACACACTGTATAATGAAGAAATAGAAGAGAGGGAAAATGGTGGAACACCACAGATTATAGGAATAATAAGAGCAGCTTTGGCTTTTTGGGTAAAAGAATATATCAGCTACCAAGAGATAGAGAAGCAAGAGCACCAGTATGTAGAAAGGGCTTTGAAGAGACTTCTCCCAAATAGAAGCATCTGCATTTTAGGGAACACGTCTTCTAAGCGACAAGCCATATTATCTTTTATCATTTACTCTTCGACTAATTCGTCGCCCAACTGTATCACAGATAGATTATGTAAACCTGACAACAGAGAAAAGGTTGGAAAGCTTTACCTGTGGGAAGAAACGGGGTGTATGAGAGGCAAACCTCTTCATGGTCCTTTTGTAGCAGCGGTCCTGAGCGATCTGTTCGGCATTCAGTCTCGTGGAGGATGCAGTTGTGCCGGTCCCTATGGTCACAATCTGCTCAACATTGATGAAACATGCTCGCATGCTTACAGATCTGCCATTGCTAAGGGCTATGCTGGAATAAAACCTGGATGGACAAGAGTAAGCTTTCCCTACTACATGCCAAATGAGGAGTTCGAATTCATTTTAAAAGCTTTAGAATTCATAGCTGATTATGGACAAAGATTCCTTCCTTTGTATGCCTTCAATTTGAGAAATGGTAGCTGGACACTGAAGAAAAAGGAGCTCGCCGACCTACTCGGGAAGGAGAATTACAGTGACAGTCACATCTTTGCATTCAAAAACCAATGTACCAATGCAGAAGCTAAGTTAGCAGCCATAGTATACAAGCATAAATCATATTTAGAATCTGCCAAAAAAATTGCCAATCTTCTCCCCAAGTTCCCTCCTGAGAGAGAGTTTCACGAGGACATTGAATCCTCTCTATTATACTTCAGAATCTAG 1968 43.39 MELKVEKPMWKKPENFAGEAYTSDRVYAEADEKEAESASIGSYGVCGRSRSFQTVEMDGVPFSGWAEERLAWLRSQIIGGEADFDSPFGERRLCYADHTASGRSLRYIEDFILRNVLPFYGNTHTCDSYVGHHTTKMVNDATTYIKKCLGGGEEEVLLFCGQGTTSAIKRLQEVMGIAVPSILRERVIETLKEEERWVVFVGPYEHHSNLLSWRQSLAEVIEIGMDENGLLDIEMLRSQLEEYKKAGNRPILGSFSACSNVTGVYSDTKAIATLIHQYGGHVCFDFAASGPYVQIDMQPGEIDGYDAIFLSTHKFLGGPGSPGILLMNKSLYKLKSSPPSTCGGGTVSYVNGFSEKDTLYNEEIEERENGGTPQIIGIIRAALAFWVKEYISYQEIEKQEHQYVERALKRLLPNRSICILGNTSSKRQAILSFIIYSSTNSSPNCITDRLCKPDNREKVGKLYLWEETGCMRGKPLHGPFVAAVLSDLFGIQSRGGCSCAGPYGHNLLNIDETCSHAYRSAIAKGYAGIKPGWTRVSFPYYMPNEEFEFILKALEFIADYGQRFLPLYAFNLRNGSWTLKKKELADLLGKENYSDSHIFAFKNQCTNAEAKLAAIVYKHKSYLESAKKIANLLPKFPPEREFHEDIESSLLYFRI 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9652055 9655569 + Lsi01G011470.1 Lsi01g01147 653805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01147 655 Pfam Aminotransferase class-V 116 435 IPR000192 -
Lsi01g01147 655 Gene3D Aspartate Aminotransferase, domain 1 378 561 IPR015422 GO:0003824
Lsi01g01147 655 Gene3D - 112 349 IPR015421 GO:0003824
Lsi01g01147 655 PANTHER CYSTEINE DESULFURASE 29 655 - -
Lsi01g01147 655 SUPERFAMILY PLP-dependent transferases 87 555 IPR015424 -
Lsi01g01147 655 PANTHER - 29 655 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01147 - - - csv:101223213 1178.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01147 Lsi-Chr1:9652055 Lsi10g01119 Lsi-Chr10:15438078 1.10E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1290 . . . . . . . Bma15g00794 . . Cma03g01091 . Car03g00983 . . Cpe19g00531 Cpe10g00339 . . . . . . . Cla01g01518 Cam01g1588 Cec04g1231 Cco04g1302 Clacu01g1613 Cmu01g1499 Cre04g1177 . . . . Lsi01g01147 . . Cme08g01081 . Blo06g00197 . . . . . . . Cmo03g01077 . . . . . . . . . . . . . . . . . . . . . . Csa06g02784 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005411 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 3 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01147 Lsi_Chr01 FPKM 15.139765 16.098848 12.415615 13.960387 12.012975 11.912688 12.953413 16.484724 19.843464 17.028969