Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g01155 | ATGCCTCTTGGTTGGGTAAAAAAATTGAGTAGAAACAAGGACCATCACAATCACCCCACTTCCCCTCTTAACCTCTTCAAGTCTTCTTCCCCCAAAACTCAACCTAAGAACCCTACCCACAAACCCAAGAGCTTCGATGAGGTTTCTGCTGTGATTTTCTCTCGCAATTCCCCCAGGTCCAGCAGGGATCTGGGCTCTTCTGGTGCTGCCTCTTCTGGGTTTTCCGGTTTTGACTCCGATAGTGGGGATAAGAGTCTTCCTCTTCCTCGACCTGCTATTTCCGGCCTTGGGATTGATCATGGACCCGGGAATGGATCTGGGTCCAGTTCGGTCTCTAGTGTTAGCTCTTCCGGGTCTTCGGATGATCATCCATCTGCTCAAGAACAGCTCCAATTTGGAGCTTACAGAGGATTTGCCGATAACAGAATAGAAACAAGGCCAAGAAGTCCAGGTCCAGGATCAAAAGGACCCACCAGTCCTACATCACCCCTGAACCCACGGTTCTGTGGCATGAGTCTGGAGTCTCCTACAACTCATAAGCTGCCGCTTCCTCCAAGTGCTCCCACCAGCCCATCTTCCTTGACCAGCACGAGAGCTATCAATATCGGCGATAACAACACAGTTACACAATCAAAGTGGAAGAAAGGAAGGCTTCTGGGAAGGGGAACATTTGGGCATGTTTACCTTGGATTTAACAGTGTAAGTGGCCAAATGTGTGCAATTAAGGAGGTCAGGGTTATAAGTGATGACTCCACATCAAAGGAATGTCTCAAGCAATTGAACCAGGAGATTACTCTGCTCAGTCAGCTGTCGCATCCAAACATTGTCCGGTACTATGGTAGTGAAATGGGTGAGGAGTCGCTCTCAGTCTATTTAGAATACATTTCCGGTGGCTCAATTCACAAATTACTTCAAGAATATGGCGCCTTCAAAGAACCTGTTATAAGAAATTATACCCGAAAGATTCTTTCCGGGCTTGCTTATCTACATGGGAGAAATACAGTGCATAGGGACATCAAAGGGGCAAATATCTTAGTAGATCCAAAAGGCGAGGTCAAGTTGGTGGACTTTGGCATGGCGAAACATGTTGTGATGAATACAAATGGCTACAGTCTTGCTGTAGACATTTGGAGTTTAGGATGTACGGTTCTTGAAATGGCCACGTCTAAACCGCCTTGGAGCAAATACGAAGGGGTGGCTGCCATTTTCAAAATTGGGAATAGTAAAGACATTCCTGAAATTCCAGACCATCTCTCCAATGATGCTAAAAGCTTTGTGCAATTATGCTTGCAACGGGATCCATCTGCACGTCCTTCTGCTGCAGATCTACTGGATCATCCTTTTGTTCAAGATGCAGTAACACCAAGAGCATCTGATGTTAACTTCTCCATGGATGCATTCCCCTTTAGCTTCGATGGAATCCAGACTCCGGTAAGCCTTTCGACATCACTTGGCTTACTTAAAGAATCACAAAGCCAAGATGAGACCCCATTGTTAGATCGGCATCCAAACAGGAAAAGTATAAGCATATGTGATGGAGATTATGTGACAAACCCAACATTCTCTTCCAGAGCTCCGAGTCCTAGGGGAAATGGAAGATTAATCACATCCTTGCCCGTCTCTCCATGTTCGAGTCCATTACGGTCGAATGGCCCCACACACCAGAGCTGTTATCTTTCACCACCTCATACATCTTACATGGGGATGGGTCAAAGCGGATACAATTTGAATGAATACGCATATAACACGAGACCAAACACATTGTTCACCCTTGATCCTTTGCGAGAGTCATCCCTATTGAAAGTGCAGACTCATCTTGGATCACCAAGAAGACCTCTTTGA | 1842 | 45.93 | MPLGWVKKLSRNKDHHNHPTSPLNLFKSSSPKTQPKNPTHKPKSFDEVSAVIFSRNSPRSSRDLGSSGAASSGFSGFDSDSGDKSLPLPRPAISGLGIDHGPGNGSGSSSVSSVSSSGSSDDHPSAQEQLQFGAYRGFADNRIETRPRSPGPGSKGPTSPTSPLNPRFCGMSLESPTTHKLPLPPSAPTSPSSLTSTRAINIGDNNTVTQSKWKKGRLLGRGTFGHVYLGFNSVSGQMCAIKEVRVISDDSTSKECLKQLNQEITLLSQLSHPNIVRYYGSEMGEESLSVYLEYISGGSIHKLLQEYGAFKEPVIRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPKGEVKLVDFGMAKHVVMNTNGYSLAVDIWSLGCTVLEMATSKPPWSKYEGVAAIFKIGNSKDIPEIPDHLSNDAKSFVQLCLQRDPSARPSAADLLDHPFVQDAVTPRASDVNFSMDAFPFSFDGIQTPVSLSTSLGLLKESQSQDETPLLDRHPNRKSISICDGDYVTNPTFSSRAPSPRGNGRLITSLPVSPCSSPLRSNGPTHQSCYLSPPHTSYMGMGQSGYNLNEYAYNTRPNTLFTLDPLRESSLLKVQTHLGSPRRPL | 613 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 9726565 | 9731215 | + | Lsi01G011550.1 | Lsi01g01155 | 653813 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g01155 | 613 | ProSitePatterns | Protein kinases ATP-binding region signature. | 219 | 242 | IPR017441 | GO:0005524 | |
Lsi01g01155 | 613 | SUPERFAMILY | Protein kinase-like (PK-like) | 211 | 521 | IPR011009 | - | |
Lsi01g01155 | 613 | Pfam | Protein kinase domain | 214 | 449 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi01g01155 | 613 | ProSiteProfiles | Protein kinase domain profile. | 213 | 449 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi01g01155 | 613 | SMART | serkin_6 | 213 | 449 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi01g01155 | 613 | MobiDBLite | consensus disorder prediction | 142 | 198 | - | - | |
Lsi01g01155 | 613 | MobiDBLite | consensus disorder prediction | 1 | 125 | - | - | |
Lsi01g01155 | 613 | Gene3D | Transferase(Phosphotransferase) domain 1 | 209 | 466 | - | - | |
Lsi01g01155 | 613 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 1 | 590 | - | - | |
Lsi01g01155 | 613 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 3 | 1 | 590 | - | - | |
Lsi01g01155 | 613 | MobiDBLite | consensus disorder prediction | 103 | 125 | - | - | |
Lsi01g01155 | 613 | MobiDBLite | consensus disorder prediction | 50 | 79 | - | - | |
Lsi01g01155 | 613 | MobiDBLite | consensus disorder prediction | 21 | 38 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01155 | Lsi-Chr1:9726565 | Lsi09g00476 | Lsi-Chr9:5009804 | 1.17E-105 | dispersed | |
Lsi01g01155 | Lsi-Chr1:9726565 | Lsi05g01214 | Lsi-Chr5:20005153 | 6.82E-120 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83281 | PF00069 | Pkinase | 1.20E-56 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g01155 | K04421 | - | csv:101203907 | 1015.76 |