Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01155 ATGCCTCTTGGTTGGGTAAAAAAATTGAGTAGAAACAAGGACCATCACAATCACCCCACTTCCCCTCTTAACCTCTTCAAGTCTTCTTCCCCCAAAACTCAACCTAAGAACCCTACCCACAAACCCAAGAGCTTCGATGAGGTTTCTGCTGTGATTTTCTCTCGCAATTCCCCCAGGTCCAGCAGGGATCTGGGCTCTTCTGGTGCTGCCTCTTCTGGGTTTTCCGGTTTTGACTCCGATAGTGGGGATAAGAGTCTTCCTCTTCCTCGACCTGCTATTTCCGGCCTTGGGATTGATCATGGACCCGGGAATGGATCTGGGTCCAGTTCGGTCTCTAGTGTTAGCTCTTCCGGGTCTTCGGATGATCATCCATCTGCTCAAGAACAGCTCCAATTTGGAGCTTACAGAGGATTTGCCGATAACAGAATAGAAACAAGGCCAAGAAGTCCAGGTCCAGGATCAAAAGGACCCACCAGTCCTACATCACCCCTGAACCCACGGTTCTGTGGCATGAGTCTGGAGTCTCCTACAACTCATAAGCTGCCGCTTCCTCCAAGTGCTCCCACCAGCCCATCTTCCTTGACCAGCACGAGAGCTATCAATATCGGCGATAACAACACAGTTACACAATCAAAGTGGAAGAAAGGAAGGCTTCTGGGAAGGGGAACATTTGGGCATGTTTACCTTGGATTTAACAGTGTAAGTGGCCAAATGTGTGCAATTAAGGAGGTCAGGGTTATAAGTGATGACTCCACATCAAAGGAATGTCTCAAGCAATTGAACCAGGAGATTACTCTGCTCAGTCAGCTGTCGCATCCAAACATTGTCCGGTACTATGGTAGTGAAATGGGTGAGGAGTCGCTCTCAGTCTATTTAGAATACATTTCCGGTGGCTCAATTCACAAATTACTTCAAGAATATGGCGCCTTCAAAGAACCTGTTATAAGAAATTATACCCGAAAGATTCTTTCCGGGCTTGCTTATCTACATGGGAGAAATACAGTGCATAGGGACATCAAAGGGGCAAATATCTTAGTAGATCCAAAAGGCGAGGTCAAGTTGGTGGACTTTGGCATGGCGAAACATGTTGTGATGAATACAAATGGCTACAGTCTTGCTGTAGACATTTGGAGTTTAGGATGTACGGTTCTTGAAATGGCCACGTCTAAACCGCCTTGGAGCAAATACGAAGGGGTGGCTGCCATTTTCAAAATTGGGAATAGTAAAGACATTCCTGAAATTCCAGACCATCTCTCCAATGATGCTAAAAGCTTTGTGCAATTATGCTTGCAACGGGATCCATCTGCACGTCCTTCTGCTGCAGATCTACTGGATCATCCTTTTGTTCAAGATGCAGTAACACCAAGAGCATCTGATGTTAACTTCTCCATGGATGCATTCCCCTTTAGCTTCGATGGAATCCAGACTCCGGTAAGCCTTTCGACATCACTTGGCTTACTTAAAGAATCACAAAGCCAAGATGAGACCCCATTGTTAGATCGGCATCCAAACAGGAAAAGTATAAGCATATGTGATGGAGATTATGTGACAAACCCAACATTCTCTTCCAGAGCTCCGAGTCCTAGGGGAAATGGAAGATTAATCACATCCTTGCCCGTCTCTCCATGTTCGAGTCCATTACGGTCGAATGGCCCCACACACCAGAGCTGTTATCTTTCACCACCTCATACATCTTACATGGGGATGGGTCAAAGCGGATACAATTTGAATGAATACGCATATAACACGAGACCAAACACATTGTTCACCCTTGATCCTTTGCGAGAGTCATCCCTATTGAAAGTGCAGACTCATCTTGGATCACCAAGAAGACCTCTTTGA 1842 45.93 MPLGWVKKLSRNKDHHNHPTSPLNLFKSSSPKTQPKNPTHKPKSFDEVSAVIFSRNSPRSSRDLGSSGAASSGFSGFDSDSGDKSLPLPRPAISGLGIDHGPGNGSGSSSVSSVSSSGSSDDHPSAQEQLQFGAYRGFADNRIETRPRSPGPGSKGPTSPTSPLNPRFCGMSLESPTTHKLPLPPSAPTSPSSLTSTRAINIGDNNTVTQSKWKKGRLLGRGTFGHVYLGFNSVSGQMCAIKEVRVISDDSTSKECLKQLNQEITLLSQLSHPNIVRYYGSEMGEESLSVYLEYISGGSIHKLLQEYGAFKEPVIRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPKGEVKLVDFGMAKHVVMNTNGYSLAVDIWSLGCTVLEMATSKPPWSKYEGVAAIFKIGNSKDIPEIPDHLSNDAKSFVQLCLQRDPSARPSAADLLDHPFVQDAVTPRASDVNFSMDAFPFSFDGIQTPVSLSTSLGLLKESQSQDETPLLDRHPNRKSISICDGDYVTNPTFSSRAPSPRGNGRLITSLPVSPCSSPLRSNGPTHQSCYLSPPHTSYMGMGQSGYNLNEYAYNTRPNTLFTLDPLRESSLLKVQTHLGSPRRPL 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9726565 9731215 + Lsi01G011550.1 Lsi01g01155 653813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01155 613 ProSitePatterns Protein kinases ATP-binding region signature. 219 242 IPR017441 GO:0005524
Lsi01g01155 613 SUPERFAMILY Protein kinase-like (PK-like) 211 521 IPR011009 -
Lsi01g01155 613 Pfam Protein kinase domain 214 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01155 613 ProSiteProfiles Protein kinase domain profile. 213 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01155 613 SMART serkin_6 213 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01155 613 MobiDBLite consensus disorder prediction 142 198 - -
Lsi01g01155 613 MobiDBLite consensus disorder prediction 1 125 - -
Lsi01g01155 613 Gene3D Transferase(Phosphotransferase) domain 1 209 466 - -
Lsi01g01155 613 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 590 - -
Lsi01g01155 613 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 3 1 590 - -
Lsi01g01155 613 MobiDBLite consensus disorder prediction 103 125 - -
Lsi01g01155 613 MobiDBLite consensus disorder prediction 50 79 - -
Lsi01g01155 613 MobiDBLite consensus disorder prediction 21 38 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01155 Lsi-Chr1:9726565 Lsi09g00476 Lsi-Chr9:5009804 1.17E-105 dispersed
Lsi01g01155 Lsi-Chr1:9726565 Lsi05g01214 Lsi-Chr5:20005153 6.82E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83281 PF00069 Pkinase 1.20E-56 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01155 K04421 - csv:101203907 1015.76