Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01160 ATGCTTCAGAACTCAGAACTCGACCTTGATTACTCCTGGGAAATGAAAGCCTTGAATTGGGAACAAGTAGGCGGTGACAGTGGAGCAAGAAAAGAGTTTGAAAAAGTGCAGAAGGCATTGTTGCAATCTGACGTTCAATCCAAATCAGATAAAAGCCCAGTGACAGTAGCCGATTACGGTTCACAGGCGCTGGTTAGTTTTGTACTGGAAAGGGAACTCCCTTCTGAACCTTTTTCATTGGTAGCTGAGGAGGATTCAGGAGATCTCCAAAAAGAGAGTGGTCAGGAAACATTACATCGCATTACAGAACTTGTAAACGAGACACTTTCCAGTGAGGGATCATATGGTGCAACCTTAACGACAGAAGATGTGCTTAGGGCTATTGACAATGGGAAATCTGAAGGAGGTTCCACTGGTCGGCATTGGGTTTTGGATCCCATAGATGGAACAAAGGGATTTCTAAGAGGGGACCAATATGCTACTGCATTGGCATTGCTTGATGATGGGAAAGTAGTATTGGGCGTCCTAGCCTGTCCAAATCTTCCCTTGCAACCAATAAGTAGCAATAATCAGCATTCTCTGCTTGGAGACGCTGGTTGCCTATTCTTTTCTACAGTTGGTGCAGGAACATATATGCAGTCACTAACTGGTTCTACATTAACAAAGGTGAGTGTCAGTGCTATTGAAAATTCTGAAGAAGCATCCTTCTTTGAATCATATGAAGCTGCTCACTCTATGCATGACCTTACTAGCTCCATTGCACAAAAACTTGGTGTTAAAGCACCGCCTGTTAGAATCGACAGTCAAGCAAAATATGGCGCCCTTTCCCGAGGAGATGGAGCCATATACCTTCGTTTTCCTCACAAAGGATACCGTGAAAAGATTTGGGACCATGCTGCTGGATGCATTGTTGTTACAGAAGCTGGTGGAGTGGTTACGGATGCAGCTGGGAATGCACTGGATTTCTCAAGAGGAAGATATCTGGATCTGTACAAGGGTATCATTGTTACGAACCAGAGACTGATGCCATCACTCCTCAAGGCAGTTCAAGAAGCTCTTCAACAGACAGCTTCTTCAACCTTGTGA 1086 44.48 MLQNSELDLDYSWEMKALNWEQVGGDSGARKEFEKVQKALLQSDVQSKSDKSPVTVADYGSQALVSFVLERELPSEPFSLVAEEDSGDLQKESGQETLHRITELVNETLSSEGSYGATLTTEDVLRAIDNGKSEGGSTGRHWVLDPIDGTKGFLRGDQYATALALLDDGKVVLGVLACPNLPLQPISSNNQHSLLGDAGCLFFSTVGAGTYMQSLTGSTLTKVSVSAIENSEEASFFESYEAAHSMHDLTSSIAQKLGVKAPPVRIDSQAKYGALSRGDGAIYLRFPHKGYREKIWDHAAGCIVVTEAGGVVTDAAGNALDFSRGRYLDLYKGIIVTNQRLMPSLLKAVQEALQQTASSTL 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9748205 9753880 + Lsi01G011600.1 Lsi01g01160 653818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01160 361 Pfam Inositol monophosphatase family 50 353 IPR000760 GO:0046855
Lsi01g01160 361 PANTHER BNAA09G06680D PROTEIN 33 356 - -
Lsi01g01160 361 CDD PAP_phosphatase 29 351 - -
Lsi01g01160 361 ProSitePatterns Inositol monophosphatase family signature 1. 142 155 IPR020583 -
Lsi01g01160 361 ProSitePatterns Inositol monophosphatase family signature 2. 296 310 IPR020550 GO:0046854
Lsi01g01160 361 SUPERFAMILY Carbohydrate phosphatase 42 353 - -
Lsi01g01160 361 Gene3D - 27 223 - -
Lsi01g01160 361 PANTHER PHOSPHATASE 33 356 - -
Lsi01g01160 361 Gene3D - 224 355 - -
Lsi01g01160 361 TIGRFAM bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase 33 356 IPR006239 GO:0006790|GO:0008441
Lsi01g01160 361 PRINTS Inositol monophosphatase superfamily signature 52 72 IPR000760 GO:0046855
Lsi01g01160 361 PRINTS Inositol monophosphatase superfamily signature 293 317 IPR000760 GO:0046855
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01160 K15422 SAL; 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase [EC:3.1.3.7 3.1.3.57] - csv:101204881 581.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01160 Lsi-Chr1:9748205 Lsi04g01292 Lsi-Chr4:20363351 1.25E-83 dispersed
Lsi01g01160 Lsi-Chr1:9748205 Lsi02g00710 Lsi-Chr2:6369090 2.79E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1315 . . . Bda10g00403 . . . Bma15g00782 . . Cma03g01102 . Car03g00991 . Sed10g1074 . Cpe10g00329 Bhi03g01336 Tan03g1298 Cmetu08g0340 . Hepe04g1105 . . Cla01g01508 Cam01g1576 Cec04g1220 Cco04g1288 Clacu01g1601 Cmu01g1489 Cre04g1168 . . Cone6ag1270 . Lsi01g01160 . . Cme08g01092 . . . . Bpe10g00263 . . . . Cmo03g01085 . . . . . . . . . . . . . . . . . . . . . . Csa06g02772 Chy02g01062 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009021 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01160 Lsi_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.064825