Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01162 ATGGAATTTCGCATTCTGCAACAGTCTCCATCGTGTTATGCAGGAAATGTCTTTTGCTTGGTCCAGCCCCGTTTGGGACGGAAGTTTCTTAGTTGGGCTCCCACGAACACAACGTTTTTGCAGAAGATATGTTCACGAAATGAAGCTAGGAGAAAAACACAACGTCGTTCGGAAGTTAATAGAGCGGCTGTACTCTGTTCAACTAGTTTAAATGAGAGTCCATTGGCGCACTATGATAACGTGAAAATTATTTATTCGGTAGCTGCTGCCACGGGTCATAATCAGGAATCTCATCCAGAATCTCATCTCAGGGTTCCTGCAATAGCAAATGCTCTTGAAGATATGGAACTCACACCTAAGTTTCAAGGTTCAAATGTCATTGAACTTCAAAATTACAAACCTGCTTCAGTTGATGACATTGTGAGTGTTCATTCAAAATCATACGTGGCAGGCCTTGAGAAGGCTATGGATAGGGCTTCTCAAGATGGACTTATTTTAATTGAAGGCTCTGGACCGACATATGCAACTGCCACTACATTTAATGAATCACTAGTTGCAGCTGGAGCAGGACTTTCTTTACTTGATTCAGTGGTTAAAGCATCAAAAACCTACAAGAATCCGCCAATTGGTTTTGCATTGATAAGACCTCCAGGACATCATGCATTCCCCAAGGGACCGATGGGATTCTGTGTTTTTGGGAACGTAGCTATTGCAGCTCGTTATGCCCAACGTGTGCATGGATTGAAGCGTGTCTTTATTATAGATTTTGATGCTCACCATGGGAATGGAACAAGTGATGCATTCTATGACGATTCAGATATATTCTTCCTTTCAACTCACCAAGATGGAAGTTACCCTGGAACTGGTAAAATCGATGAAGTGGGTCGTGGAGACGGGGAAGGAACAACTCTGAATATTCCTCTACCGGGAGGCTCAGGTGATTATGCCATGAAAATGGTGTTTGACGAAGTAATTGTACCCTGTGCTCAAAGATTTAAGCCTGATATCATTCTCGTCTCTGCTGGGTACGATGCTCATGTATTAGATCCATTAGCCAATCTGCAATTCACGACCGGAACATACTACATGCTTGCATCCAATATTAAACAACTGGCAAAGGAATTATGCGAGGGTCGATGTGTTTTTTTCCTGGAAGGAGGTTACAACCTCGAGTCTCTTTCATATTCAGTGGCTGATTCGTTCCGTGCATTTCTTGATGAGCCGAGCTTGGCGTCAGGGTTCGATAATCCTGCAATCTTGTATGAAGAACCATCAAGGAAGTTTAAGCAAGTGATCCATAAAGTGAAACAAATACATTTACTTTAA 1326 42.38 MEFRILQQSPSCYAGNVFCLVQPRLGRKFLSWAPTNTTFLQKICSRNEARRKTQRRSEVNRAAVLCSTSLNESPLAHYDNVKIIYSVAAATGHNQESHPESHLRVPAIANALEDMELTPKFQGSNVIELQNYKPASVDDIVSVHSKSYVAGLEKAMDRASQDGLILIEGSGPTYATATTFNESLVAAGAGLSLLDSVVKASKTYKNPPIGFALIRPPGHHAFPKGPMGFCVFGNVAIAARYAQRVHGLKRVFIIDFDAHHGNGTSDAFYDDSDIFFLSTHQDGSYPGTGKIDEVGRGDGEGTTLNIPLPGGSGDYAMKMVFDEVIVPCAQRFKPDIILVSAGYDAHVLDPLANLQFTTGTYYMLASNIKQLAKELCEGRCVFFLEGGYNLESLSYSVADSFRAFLDEPSLASGFDNPAILYEEPSRKFKQVIHKVKQIHLL 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9761848 9769022 + Lsi01G011620.1 Lsi01g01162 653820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01162 441 Gene3D Histone deacetylase domain 69 439 IPR037138 -
Lsi01g01162 441 CDD HDAC_classII 98 405 - -
Lsi01g01162 441 PANTHER HISTONE DEACETYLASE 14 51 440 - -
Lsi01g01162 441 PANTHER HISTONE DEACETYLASE 51 440 - -
Lsi01g01162 441 SUPERFAMILY Arginase/deacetylase 83 409 IPR023696 -
Lsi01g01162 441 Pfam Histone deacetylase domain 98 402 IPR023801 -
Lsi01g01162 441 PRINTS Histone deacetylase superfamily signature 250 265 IPR000286 -
Lsi01g01162 441 PRINTS Histone deacetylase superfamily signature 334 344 IPR000286 -
Lsi01g01162 441 PRINTS Histone deacetylase superfamily signature 216 239 IPR000286 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01162 - - - csv:101205371 797.349
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01162 Lsi-Chr1:9761848 Lsi02g01189 Lsi-Chr2:14982887 3.02E-45 dispersed
Lsi01g01162 Lsi-Chr1:9761848 Lsi06g01420 Lsi-Chr6:24743658 1.68E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1318 . . . Bda10g00405 . . . Bma15g00779 . . Cma03g01104 . Car03g00993 . Sed11g1186 . Cpe10g00327 Bhi03g01333 Tan03g1296 Cmetu08g1459 . Hepe04g1102 . . Cla01g01506 Cam01g1574 Cec04g1218 Cco04g1286 Clacu01g1599 Cmu01g1487 . . . . . Lsi01g01162 . . Cme08g01094 . Blo06g00188 . . Bpe10g00264 . . . . Cmo03g01087 . . . . . . . . . . . . . . . . . . . . . . Csa06g02770 Chy02g01064 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007674 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01162 Lsi_Chr01 FPKM 10.192983 9.084112 17.556496 17.154562 19.341951 15.245963 18.065838 49.41048 48.685223 47.306637