Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01170 ATGACACAATTTGCAATAACAAACCACATTGACATAGTGACATATTCATACATATATATATATATATATACACATATACATATAGTTCCATTCAATAATATATATTTAAAACAAAATAATAAAGAAAAGAGAAAAATGGAATCCACCGGCACGACGGCGGCCGGAATTCTCCCGACGATGTTGGACAACAAGAAGAATCTCCCAAGGGAATTTGTGTGGCCACGTGGGGAGTTGGCAGCGGGAAGTGCGGAGGAGCGAGAGGAGCTGAAAGAGCCGTTGATTGACTTGGGGGGATTCCGGCGAGGGGAGGCGGCGGCGACGGCGGAAGCGGCGGCGTTGGTGCGAATGGCGTGTAGGAAGCACGGGCTGTTTCAGGTGACGAATCATGGAGTGGCGGCGGAGCTGATAAAGGCGGCGTATGAAGAAGGAGAAGCGATATTCAAGATGCCATTAGTGAAGAAAATTAGCGTGGGGAAAAAGCCAGGGAGAGTTTCGGGATATTCAGGAGCTCATGCAGAGAGATTCTCGTCAAAGCTTCCATGGAAAGAGACGTTTTCTTTTGAGTATTCAACTGATGATTCTCAACGCCTTCATGTTCTTCATTATTTTAAATCCTTGTTCGGACGCGATTTCGAGAATACTGGATGGGTATACCAAAGATACTGTGAGGAAATGACAAGAACAGCACTAATGATAATGGAGCTTCTAGCAATAAGTTTGGGAGTAGAGAGATGTCATTACAGGAAGTTCTTTGAAGATGGAAGATCAATAATGAGATGCAATTACTATCCACCATGTGAAAATGCAGGGCTGACCTTAGGTACAGGCCCTCATTGTGACCCAACTTCACTCACAATTCTCCATCAAGATCAAGTTGGAGGCCTTGAGGTTTTTGCTAACAATAGATGGCTCTCTGTCAAACCTAGACCAGATGCTTTGGTTATTAACATTGGAGACACTTTTATGAAAGCAATGCAGGCACTGTCGAACGGAGCGTACAAGAGCTGCCTGCATAGGGCAGTGGTGAATAGGAAGAGAGAAAGGAGGTCATTGGTGTTCTTTGTGTGCCCAAAAGATGATAAAGTGGTGAGACCCCCACAAGATTTGGTGGGCAGAGAAAGGCCAAGACAGTACCCTGATTTCACATGGTCAGAAATAAGCATCAGCTCCAATCTTGGGCAGCCAAATCTCAGCTCCAATCTGAAATCCTCTGGCTCTAACAGTGTAACTTTTGAGACAGTATCCTAG 1248 44.87 MTQFAITNHIDIVTYSYIYIYIYTHIHIVPFNNIYLKQNNKEKRKMESTGTTAAGILPTMLDNKKNLPREFVWPRGELAAGSAEEREELKEPLIDLGGFRRGEAAATAEAAALVRMACRKHGLFQVTNHGVAAELIKAAYEEGEAIFKMPLVKKISVGKKPGRVSGYSGAHAERFSSKLPWKETFSFEYSTDDSQRLHVLHYFKSLFGRDFENTGWVYQRYCEEMTRTALMIMELLAISLGVERCHYRKFFEDGRSIMRCNYYPPCENAGLTLGTGPHCDPTSLTILHQDQVGGLEVFANNRWLSVKPRPDALVINIGDTFMKAMQALSNGAYKSCLHRAVVNRKRERRSLVFFVCPKDDKVVRPPQDLVGRERPRQYPDFTWSEISISSNLGQPNLSSNLKSSGSNSVTFETVS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9923566 9928564 - Lsi01G011700.1 Lsi01g01170 653828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01170 415 Pfam non-haem dioxygenase in morphine synthesis N-terminal 92 194 IPR026992 -
Lsi01g01170 415 PANTHER GIBBERELLIN 20 OXIDASE 1-B-LIKE 58 386 - -
Lsi01g01170 415 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 254 357 IPR005123 -
Lsi01g01170 415 SUPERFAMILY Clavaminate synthase-like 57 385 - -
Lsi01g01170 415 Gene3D - 51 387 IPR027443 -
Lsi01g01170 415 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 58 386 - -
Lsi01g01170 415 MobiDBLite consensus disorder prediction 392 415 - -
Lsi01g01170 415 PRINTS Isopenicillin N synthase signature 114 131 - -
Lsi01g01170 415 PRINTS Isopenicillin N synthase signature 231 247 - -
Lsi01g01170 415 PRINTS Isopenicillin N synthase signature 345 363 - -
Lsi01g01170 415 Pfam 2OG-Fe(II) oxygenase superfamily 256 357 IPR044861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01170 K05282 GA20ox; gibberellin-44 dioxygenase [EC:1.14.11.12] - csv:101214165 595.504
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01170 Lsi-Chr1:9923566 Lsi09g00562 Lsi-Chr9:5943825 1.58E-125 dispersed
Lsi01g01170 Lsi-Chr1:9923566 Lsi09g01917 Lsi-Chr9:28019376 1.04E-107 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1330 . . . . . . . . . . Cma03g01109 Cma07g00811 Car03g01002 Car07g00798 . Cpe19g00512 Cpe10g00323 . . . . . . . Cla01g01490 Cam01g1558 Cec04g1205 Cco04g1272 Clacu01g1584 Cmu01g1473 Cre04g1154 . . Cone6ag1263 . Lsi01g01170 . . Cme08g01138 . . . . . . . . . Cmo03g01099 Cmo07g00841 . . . . . . . . . . . . . . . . . . . . . Csa06g02740 Chy02g01095 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007963 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 3 1 1 1 1 1 1 1 3 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01170 Lsi_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0