Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01173 ATGGCCGATTCCACGACCAGTAGGAAGAAACCACTCAGCTTGAACGATCGTCACTACCGCCTCCTTCAGGATCTTTCTGCTCCTCCCAAACCCTCTTTGGCAACCGCCGTTGATCAGAGAGAAGGAGACGAAGATGAAAAACCCTCGAGAATCGAACTCGAGAATCAATGTCGCTTCAGTGAAGTATCGTCTAATGTTGACGAATTTGATAATAGAGTTCCGCAGTCTTCGGGTGTTAATGTCGAAGAAAAGCCGATGAAGGTTAAGATCAGTGGCCGACGCCGTCTGTGCAAACTCTCGTCTCGAGAAGATGATCATTTGGATAATCCAGTGGGGTTCGATTTCAATGCACCCAAATTTTCTGGTATTACGGATTTTGATTCTCCTTCTCCGCCACCTCCACTGCCCGTCGATAATCGCGATAACAAGGGAAGTGAAATCAGGGATATTCTGAATGACTTGAGCACGAGGCTTGAGCTTTTGTCTGTCGAGAAAAAGCGAGAAAAGCCAAGAAAAATGGATTCTCTAGAAGACTTCTCGGCTTCTTATTGTGGAAATGGGAACGAGGAAGCAAATAAAGCTGATGATCGTGAGGTTGGTAGTCTGAAGTTCTCCATCAATCCATCTAGTTCCTTGTTAGGTGAAAATGTGAAAGTTGAAAAAGTTGTCAAGACTCTGAACGACGGGGAGAGTGGTGAGTACGGAGAAGAAATTCTCCCAAATAAGGTGAATGTAGATGTGTTTGACGAGGGGATTCATGAAGTTGATACGTGCAATAAAGACAGTGAACAACTTCTAAATCTAGAACATGGAAATAGTAAACATCCCAAAGGACGAGACAAATGCACGAGTCAGGATGGTCACAGGACTTACAATTCCCTAGGAAAAAGTCCTGTGTTAATAGATGAAGGAAAAGTAGACGATGAGGATGATTGCGTAGTTTTGAATAGTGAAACAAGGGATTTTAAAGAAGTAAGAAAGCAACATGGCAAATATGAAGAGAAGAATGATGATTCTGATGGGATTGACATGCTTGATAAATCTGCTGAGGATTTTATCTTGGAAGGGAAAAGCTCCATTGGTCACAAGTCTGCTTTCAAATTGCAAGGTAGAATTGCAAAGATGCTGTATCCACATCAGCGTGAAGGGTTGCGGTGGCTGTGGTCTCTACATTGTCAGGGTAAGGGTGGAATCTTAGGTGATGATATGGGTTTAGGGAAAACAATGCAGGATAAAGGTGTTCTTCTTACGACTTACGATATCGTGAGGAATAATTCAAAGTCTTTACAAGGAAACTGCTTCTCTGAAGACGATGAAACTGAGGATGGAACAACATGGGATTATATGATCCTTGATGAGGGTCATCTTATAAAGAATCCTAGCACTCAAAGAGCCAAAAGTTTGCTTGAGATACCTAGTGCTCATCGCATAATTATAAGTGGAACACCATTGCAAAACAATCTGAAGGAACTGTGGGCCCTGTTTAATTTTTGCTGTCCTGACCTATTGGGTGACAACAAGTGGTTTAAAGAACACTATGAGTGTGCAATTCTTCGTGGAAATGATAAAAAGGCTTCTGAAAGAGATAAGCGGATTGGTTCAATGGCTGCAAAGGAGTTAAGGGAACGCATCCAACCCTACTTTTTGCGTCGTATGAAAAGTGAAGTGTTTAATGAGGATAATGATCAAGCTGCTACCAAACTCTCTAAAAAGAATGACATTATTGTTTGGCTCAGACTGACTAGTTGTCAGCGACAACTTTATGAAGCTTTCTTGAAGAGTGAATTGGCACTGTCAGCATTTGATGGCTCAGTATTGGCTGCCATTACGATTCTTAAGAAAATATGCGATCATCCACTTCTTTTGACTAAAAGAGCTGCTGAAGAGGTACTGGAAGGAATGGAAACGGTGCTAAGCCCAGAAGATGCTGGTGTAGCAGAAAAGCTGGCAAAGCATTTAGCAGATGTAGTTGATAGGGATGATTATGAAGTGTATAATGACAACGTCTCTTGCAAAATATCATTCATAATGTCTTTATTGGATAATTTGATTCCGAAGGGGCATAATGTTCTTATCTTCTCTCAAACTCGCAAGATGCTCAATCTTATTGAGCAATCACTATTATCCAATGATTATGAGTTCTTACGCATTGATGGTACCACAAAAGCCACGGATAGAGTAAAGATTGTAAATGATTTTCAAGAAGGTAGAGGAGCTTCTATATTTCTCTTGACATCTCAAGTTGGTGGTTTAGGTCTTACACTTACCAGAGCAGATCGTGTCTTCAACATGAGGGCTAAGTGGAAGATGAAGAGAATGAGGAGATTGAAGAGGAAGTGCCGAAAGATGAGGCAGAGATCCAAGTATACTGATAATCAAAGCGTTGATCGAGCATACCGAATTGGACAAAAGAAAGATGTTATAGTGTATAGATTAATGACATGTGGGACTGTTGAAGAAAAGATCTACAGAAAACAGGATCTTCGGGAGCTTTTTAGCCTTCCAAAAGATGGGTTTGATACATCTGTCACACAACAACAAATGCATGAGGAACATGATCAACAACTTACAATATGGTACTTTAAGCTTTACCTATATTTGGCATTAGTGCGGCAATTTGAATATCCGATGTCTTTGATGTCCTTTGGGGCTGCTACACGGGAGACTCTAACTGACATTTTGCAGTTGACATTTTTTCCCCTTTTCCCATTTTCACTCGTTGTTCGTGGCTACAGGGACGATTCTTTGAGACGCCACATAGAGTTCCTGGAAACTCAAGGCATTGCAGGAGTTAGTCACCACAATTTGCTCTTTTCTAAGACAGCCCCAGAGCCAGTGCACGTATTGGAGGAAGAAGACACATCGTTCAGGAGGAATAAAGAGTTTGGATTCAGAGAAAGAGCAACATCAAGTTCTTCATCCGATCATGATATATACGGAGCAAAGTTTGCTTTCAACCCAAAGGATGTGAAATTGAATAGAGTTACTACAAATGCAAGCAGTCCAGGCAAACCGACAGAAAAGGAAATCAAAGATAGAATCAATCGGCTGTCTCAAACTCTAGAAAATAAGGTCCTTGTCTCAAGATTACCAGACAGGGGGGAAAGAATTCAGAAGCAAATTGTTGAATTGAATTTACAACTTTCTGAATTAAGGAGAAAAGAATATGAAAGTGAAGTCATCGACATCACCGACGAGTTCCAGAAGGTGCTGAATGTATAG 3222 41.06 MADSTTSRKKPLSLNDRHYRLLQDLSAPPKPSLATAVDQREGDEDEKPSRIELENQCRFSEVSSNVDEFDNRVPQSSGVNVEEKPMKVKISGRRRLCKLSSREDDHLDNPVGFDFNAPKFSGITDFDSPSPPPPLPVDNRDNKGSEIRDILNDLSTRLELLSVEKKREKPRKMDSLEDFSASYCGNGNEEANKADDREVGSLKFSINPSSSLLGENVKVEKVVKTLNDGESGEYGEEILPNKVNVDVFDEGIHEVDTCNKDSEQLLNLEHGNSKHPKGRDKCTSQDGHRTYNSLGKSPVLIDEGKVDDEDDCVVLNSETRDFKEVRKQHGKYEEKNDDSDGIDMLDKSAEDFILEGKSSIGHKSAFKLQGRIAKMLYPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQDKGVLLTTYDIVRNNSKSLQGNCFSEDDETEDGTTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPDLLGDNKWFKEHYECAILRGNDKKASERDKRIGSMAAKELRERIQPYFLRRMKSEVFNEDNDQAATKLSKKNDIIVWLRLTSCQRQLYEAFLKSELALSAFDGSVLAAITILKKICDHPLLLTKRAAEEVLEGMETVLSPEDAGVAEKLAKHLADVVDRDDYEVYNDNVSCKISFIMSLLDNLIPKGHNVLIFSQTRKMLNLIEQSLLSNDYEFLRIDGTTKATDRVKIVNDFQEGRGASIFLLTSQVGGLGLTLTRADRVFNMRAKWKMKRMRRLKRKCRKMRQRSKYTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQDLRELFSLPKDGFDTSVTQQQMHEEHDQQLTIWYFKLYLYLALVRQFEYPMSLMSFGAATRETLTDILQLTFFPLFPFSLVVRGYRDDSLRRHIEFLETQGIAGVSHHNLLFSKTAPEPVHVLEEEDTSFRRNKEFGFRERATSSSSSDHDIYGAKFAFNPKDVKLNRVTTNASSPGKPTEKEIKDRINRLSQTLENKVLVSRLPDRGERIQKQIVELNLQLSELRRKEYESEVIDITDEFQKVLNV 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9955085 9966891 - Lsi01G011730.1 Lsi01g01173 653831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01173 1073 MobiDBLite consensus disorder prediction 122 144 - -
Lsi01g01173 1073 MobiDBLite consensus disorder prediction 22 54 - -
Lsi01g01173 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 551 IPR027417 -
Lsi01g01173 1073 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 675 847 IPR001650 -
Lsi01g01173 1073 CDD SF2_C_SNF 669 813 - -
Lsi01g01173 1073 Gene3D - 573 859 IPR027417 -
Lsi01g01173 1073 Coils Coil 1034 1059 - -
Lsi01g01173 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 565 854 IPR027417 -
Lsi01g01173 1073 MobiDBLite consensus disorder prediction 37 54 - -
Lsi01g01173 1073 SMART ultradead3 371 512 IPR014001 -
Lsi01g01173 1073 Pfam Ribosomal protein L41 764 788 IPR007836 GO:0003735|GO:0005840|GO:0006412
Lsi01g01173 1073 Pfam SNF2-related domain 410 621 IPR000330 GO:0005524|GO:0140658
Lsi01g01173 1073 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 343 501 IPR014001 -
Lsi01g01173 1073 Pfam Helicase conserved C-terminal domain 672 802 IPR001650 -
Lsi01g01173 1073 SMART helicmild6 701 802 IPR001650 -
Lsi01g01173 1073 Gene3D - 411 572 IPR038718 -
Lsi01g01173 1073 Gene3D - 356 410 IPR038718 -
Lsi01g01173 1073 PANTHER SNF2/RAD54 FAMILY MEMBER 410 972 - -
Lsi01g01173 1073 PANTHER SNF2/RAD54 FAMILY MEMBER 318 410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01173 K20093 ERCC6L, PICH; DNA excision repair protein ERCC-6-like [EC:5.6.2.-] - qsu:112008966 808.135
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01173 Lsi-Chr1:9955085 Lsi05g01028 Lsi-Chr5:17820218 4.07E-10 dispersed
Lsi02g01261 Lsi-Chr2:16752723 Lsi01g01173 Lsi-Chr1:9955085 3.22E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1332 Blo04g00920 . . . . . Bma09g00432 . . . Cma03g01112 . Car03g01005 . . . Cpe10g00321 . . . . . . . Cla01g01488 Cam01g1555 Cec04g1201 Cco04g1269 Clacu01g1581 Cmu01g1470 Cre04g1151 . . . . Lsi01g01173 . . Cme08g01140 Blo05g00528 . . Bda14g01013 . . . . . Cmo03g01102 . . . . . . . . . . . . . . . . . . . . . . Csa06g02737 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012490 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24664 PF00176 SNF2_N 1.80E-31 CL0023 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01173 Lsi_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0