Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01174 ATGGCAGCTTCAGGGTTGCTTACGTTTCATCTCCCTCGCCTCGCCCGCCACTTTCCAATCCCTCATTCATTTAATCCTTCCGTTTCCTTTCATAACCTCGTATTTCGCCGGAAACTACCTCCTCGCCGCCCAGTCATCTTCGGCCGCAATTGCATACTTAGGAGGTCGTTCGTTGCTGCCAGTTCAAGTTCTCAAGACTGGAGAAATGGCGTTGGGGCCGTCGACGAAAGATATGATGTTATAGTCGTTGGAGGAGGACATGCGGGTTGTGAAGCTGCACTTGCATCTGCTCGTTTAGGGGCTAAAACTCTTCTTCTGACACTCAATATCGATCGAATTGCTTGGCAGCCTTGCAATCCAGCAGTAGGTGGGCCTGCAAAATCTCAACTCGTGCATGAAGTAGATGCACTCGGTGGTGAAATTGGCAAGGTCGCTGACAGTAAATGTTATCTCAATACTGTACTCATGTCAATCTCCATCTTCAGATGTTATCTACAGAAGCGTGTACTTAACGTCTCTAGAGGCCCTGCAGTACGAGCATTGCGTGCGCAAACTGATAAAAGGGACACTCCGAATCTTTCTATCAGAGAGGCCATGGTGACGGATATTTTAATAGGAAAGAATGACAACGTGGAAGGTGTTTGCACCTTTTTTGGAATGAATTTCTATGCATCCGCTGTTATTCTCACTACAGGAACATTCATGAGTGGCAAAATATGGGTTGGTAGAACTTCCATGCCTGCAGGAAGAGCGGGTGAATCAGCTTCACATGGACTCACTGAAAACTTACAACATCTTGGATTTGAAATTGATCGGCTGAAAACGGGAACCCCAGCCAGGGTGGACTGTCGGACGGTTGACTTTTCTTCACTGGAACCTCAACATGGTGATGACGAGGTCCTTGCATTTGATCTCATACGTAGGTTCAATAGATTTGAAGTCAATTGGTTTAGTTTTGATCCTGATTTTCACATAGAGAGAGAGCAAATGTGCTGTTATCTGACTCGCACTACGAAAAGTACACATGAACTTATCAAGGAGAACTTGCATGAAACTCCCACTTATGGAGGTTGGGTGGAAGCAAAAGGACCTAGATATTGCCCGTCCATTGAAGATAAGATTGTGAGGTTTCAAGACAAGGAGTCTCATCAGATTTTTCTTGAGCCAGAGGGCCGGAACGTGCCCGAGCTCTATGTGCAGGGGTTCTCTACTGGTTTGCCAGAACGACTACAGTTGCCACTTTTGAGAACTTTACCAGGTCTTGAGAACTGTTCGATGCTTAGACCTGCATATGCAGTAGAGTATGATTTCTTGCCTGCTCATCAATGTAGCAGATCTCTAATGACCAAAAAAATTGATGGGCTTTTCTTCTCTGGTCAAATAAATGGAACCACAGGCTATGAAGAAGCAGCTGCACAAGGAATCATATCTGGTATCAATGCTGCCAGATTTTCAGATGGCAAGTCCCTCATTGTTCTTGAGAGGGAAAGTAGTTACATTGGGACCTTAATCGATGATCTCGTCACCAAGGACCTTCGTGAGCCTTATCGTATGTTGACTAGCCGCTCAGAACATCGACTACTTCTCCGATCCGACAATGCTGATAGCCGCCTCACACCTCTGGGCCGTGAAATTGGGTTAATAGATGATAGGCGCTGGAAACTATACCAAGAGAAGCAGGCTAGAATATCAGATGAGAAGAAGAGATTGAAAACTGTCAGGATATCAGGAGGAGAGCTGGCTGCTGATGTTTCTCTCCTGTCTGGTCAGCCTGTGAAGGACTATTCGACATTGGAGAGTCTTCTTAAGAAACCGCACATAGGATATAACGTTTTTGATAAGCATGGTTTTGGGAATAAACTCTTAACCAAATCAGAAAAGGATTGTGTAGAGATTGATATCAAATATGAGGGTTTCATTCTACGGCAGCAAACACAACTCCAGCAGATGGTTCATCAACAACACAGAGTACTTCCCGAAGACTTGGATTACTATGCAATGACAACATTGTCTCTTGAAGCCCGCGAAAAATTATCTAAGGTGAGACCACAAACTATCGGTCAAGCAAGTAGAGTTGGCGGAGTAAGCCCTGCTGATATCACAGCTCTGCTCATCATCCTTGAATCCAACAGAAGGAAAGCTCAGGAAATGAAGCGGCATCAGATGCTCGGTTCCATCATTAGAGAATCTACCGACACAGAAGAACGCCCTTCTGGCGCTCATTTAACTGAGGCAATCAGTTCTTGA 2247 45.22 MAASGLLTFHLPRLARHFPIPHSFNPSVSFHNLVFRRKLPPRRPVIFGRNCILRRSFVAASSSSQDWRNGVGAVDERYDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADSKCYLNTVLMSISIFRCYLQKRVLNVSRGPAVRALRAQTDKRDTPNLSIREAMVTDILIGKNDNVEGVCTFFGMNFYASAVILTTGTFMSGKIWVGRTSMPAGRAGESASHGLTENLQHLGFEIDRLKTGTPARVDCRTVDFSSLEPQHGDDEVLAFDLIRRFNRFEVNWFSFDPDFHIEREQMCCYLTRTTKSTHELIKENLHETPTYGGWVEAKGPRYCPSIEDKIVRFQDKESHQIFLEPEGRNVPELYVQGFSTGLPERLQLPLLRTLPGLENCSMLRPAYAVEYDFLPAHQCSRSLMTKKIDGLFFSGQINGTTGYEEAAAQGIISGINAARFSDGKSLIVLERESSYIGTLIDDLVTKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWKLYQEKQARISDEKKRLKTVRISGGELAADVSLLSGQPVKDYSTLESLLKKPHIGYNVFDKHGFGNKLLTKSEKDCVEIDIKYEGFILRQQTQLQQMVHQQHRVLPEDLDYYAMTTLSLEAREKLSKVRPQTIGQASRVGGVSPADITALLIILESNRRKAQEMKRHQMLGSIIRESTDTEERPSGAHLTEAISS 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9969099 9980424 - Lsi01G011740.1 Lsi01g01174 653832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01174 748 Pfam Glucose inhibited division protein A 79 488 IPR040131 -
Lsi01g01174 748 Hamap tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 76 712 IPR004416 GO:0002098
Lsi01g01174 748 TIGRFAM gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 78 710 IPR004416 GO:0002098
Lsi01g01174 748 Pfam tRNA modifying enzyme MnmG/GidA C-terminal domain 492 704 IPR026904 -
Lsi01g01174 748 Gene3D - 658 708 IPR044920 -
Lsi01g01174 748 PANTHER GLUCOSE INHIBITED DIVISION PROTEIN A 65 714 IPR002218 GO:0008033|GO:0050660
Lsi01g01174 748 PANTHER PROTEIN MTO1 HOMOLOG, MITOCHONDRIAL 65 714 IPR004416 GO:0002098
Lsi01g01174 748 MobiDBLite consensus disorder prediction 728 748 - -
Lsi01g01174 748 SUPERFAMILY FAD/NAD(P)-binding domain 77 350 IPR036188 -
Lsi01g01174 748 Gene3D - 549 638 - -
Lsi01g01174 748 SMART GIDA_assoc_3_2 634 705 - -
Lsi01g01174 748 PRINTS Pyridine nucleotide disulphide reductase class-I signature 227 236 - -
Lsi01g01174 748 PRINTS Pyridine nucleotide disulphide reductase class-I signature 79 101 - -
Lsi01g01174 748 Gene3D - 71 300 IPR036188 -
Lsi01g01174 748 Gene3D - 404 548 IPR036188 -
Lsi01g01174 748 ProSitePatterns Glucose inhibited division protein A family signature 1. 363 377 IPR020595 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01174 K03495 gidA, mnmG, MTO1; tRNA uridine 5-carboxymethylaminomethyl modification enzyme - csv:101219572 1344.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1333 . . Bda04g00384 . . . Bma09g00435 . . . . Cma07g00816 . Car07g00803 . Cpe19g00508 . . . . . . . . Cla01g01487 Cam01g1554 Cec04g1200 Cco04g1268 Clacu01g1580 Cmu01g1469 Cre04g1150 . . Cone6ag1261 . Lsi01g01174 . . Cme08g01141 . . . . . . . . . . Cmo07g00845 . . . . . . . . . . . . . . . . . . . . . Csa06g02736 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008582 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01174 Lsi_Chr01 FPKM 25.297979 27.990793 17.407455 19.868315 21.960089 17.525761 19.974802 25.924688 29.643404 26.742218