Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01175 ATGAACGGCAGCGCTCGGAAAAGTCGACCGCCGCCGCAGCACCCATCGCCGGCTCCACCGACCAAGCACCAGACACTTTCTCAAGAGGAAGATTTCGTCGACGAAGATGTCTTCCTCGACGAGAATCTTCTCGATGAGGACGCTCTCATCCTCCGCGACATCGAGGAGCGTCAGGCCCTTGCTTCCCGGCTCTCCAAGTGGGCTCGTCCACCTCTTTCCCAGGATTACCTGTCCCAGTCAAAGAGCATCGTGTTTCAGCAATTGGAAATTGATTACGTGATCGGGGAAAGTCACAGAGAACTGTTGCCTAATTTGTCCGGTCCTGCCGCCATTCTTAGAATTTTTGGGGTTACGAGGGAAGGACATGGTGTATGCTGCCACGTTCATGGTTTTGAACCATACTTCTATATCAGTTGTCCTCCAGGCATGGGTCCTGATGACATCTCTCTTTTTCACCGAACTCTTGAGGCTAGAATGAAGGAGGTAAACAGGAACAGTAAAGCACCTAACTTTGTGCGTCGCATTGAATTGGTGCAAAAGAGAAGTATTCTTGATAGAGGCATACAAATTGATGGCTTTGGTATGAAGAGCTTCCTGACGTATGAAAGCAATGTGCTTTTTGCCCTCCGTTTTATGATTGACTGCAATGTTGTTGGTGGAAACTGGATTGAGACAGGCCTTTTAATCTTGACACCTTTCCTTAACACTCATCATAGATATTCAGACTTGATCAGCCATGCCCCAGAAGGGGAATTTTCTAAAATGGCTCCATTTCGGATATTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCTGAGCCTACCCAGGATCCCGTGATTCAGGTGGCAAACCTAGTTACTTTGCAGGGAGAGGACCAACCATTCTTTCGCAATGTCATGACCCTTAACTCTTGCTCTCCTATCGCGGGTGTTGATGTCTTATCATTTGATACAGAACGAGAAGTATTGCTGGCTTGGAGGGATCTAATTCGTGAAGTAGACCCTGATATAATAATTGGATATAACATCTGCAAATTCGATTTGCCATATCTAATCGAGGTTATGCAACGAGATTATAAATTAAGTTCGTACTCGTTGAATTCTGTCTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCAGATCTTCAAAATGGTAATGCGGAAACCCGGAGACGGCTTGCTGTTTATTGTTTAAAGGATGCCTATCTTCCACAACGGCTTTTAGATAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTTCCTATTTCTTTTCTTCTTTCAAGAGGGCAAAGCATCAAGGTGCTCTCTCAACTCCTTAGGAAGGCTAAACAGAAAAACCTCGTTATTCCAAATGCTAAACATGCAGGATCTGATCAAGGAACCTATGAGGGTGCTACTGTTTTGGAAGCAAGGGCTGGGTTCTATGAAAAGCCCATTGCTACGCTGGATTTTGCATCTCTATATCCATCCATCATGATGGCATATAATTTATGTTATTGCACTCTGGTGACTCCAGAAGATGCTCGTAAGCTAAACCTGCCCCCTGAACATTTCAACAAAACCCCATCTGGTGAGATATTTGTCAAGCCAAATTTACAGAAGGGGATACTTCCTGAAATATTAGAAGAACTATTGACTGCTCGGAAAAGAGCAAAGGCAGATTTGAAGGAAGCGAAGGATCCGTTTGAGAAGGCTGTGTTGGATGGTCGACAGCTAGCTCTGAAGATAAGTGCAAATTCTGTGTATGGGTTTACAGGAGCTACTGTTGGTCAGTTGCCGTGTATAGAGATATCATCAAGTGTTACAAGCTATGGCCGACAAATGATTGAACACACAAAGAAGCTTGTGGAAGATAAATTTACAACGCTTGGGGGATATGAGCACAATGCTGAGGTAATCTATGGTGATACAGATTCCGTTATGGTACAATTTGGTGTTCCCAGTGTAGAAGCAGCAATGATCTTGGGAAGGGAAGCAGCTGACTATATCAGTGGTACTTTCATAAAACCTATCAAGTTAGAGTTTGAGAAGGTATATTATCCATATCTATTGATTAGTAAGAAGAGATACGCTGGTTTATTTTGGACTAATCCAAACAAGTTTGACAAGATGGATACCAAAGGTATTGAAACAGTTCGAAGAGATAATTGCTTATTGGTGAAAAACCTTGTAAATGAGTGCTTGCACAAAATTCTTATCGATAGAGATGTCCCTGGGGCCGTTCAATATGTGAAGAACACGATTTCAGATCTGCTTATGAATCGTGTGGATTTATCACTGTTGGTTATCACCAAGGGACTAACAAAAACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAGCGCATGCGTAAGGTACTTCGGAGATGGTCCCAAGGTAGGGTCTCTTTGGAGGAGTTGGAGGATCTCTCTTCTGCAAGTGTTTTAAAAGATATTGGACCTTTCAAGGAATTCTCGTCTGCAATAGGAGCATCTGGAGATCGAGATGCCAGTGCAAGGAAAGATGCTGCCACTGCTCCAAATGTTGGCGATCGAGTACCTTATGTGATCATTAAAGCAGCAAAAGGTGCCAAGGCATATGAGAGGTCAGAGGATCCCATTTATGTTCTAGAGAATAGCATACCAATAGACCCTCAGTACTATCTCGAGAATCAGATTAGCAAGCCTCTTCTACGAATTTTTGAGCCCATCTTGAAAAACGCTAGCAAGGAACTTTTACATGGAAGTCACACGAGATCAATTTTTATTTCTACTCCGTCAAATGGTGGCATAATGAAATTTGCTAAGAAACAGCTTACCTGCATTGGCTGCAAGGCTCTACTAAGGGAGACAAAACTCTCTGCTCACACTGCAAAGGAAGAGAAGCGGAACTTTACTGCAAAGCGGTTGCAAGTGTGTCTGATTTGGAGATGGTTTTTGGGAGGCTTTGGACACAGTGCCAAGAATGCCAAGGAGCTCGTGGTTCTCTTGCACCATAGTGGCCATCCTCTAGCGAAGTTTCCAACTTCTTTCCACCTAGGAGTTATAGAAAATTACCATTGA 3102 43.36 MNGSARKSRPPPQHPSPAPPTKHQTLSQEEDFVDEDVFLDENLLDEDALILRDIEERQALASRLSKWARPPLSQDYLSQSKSIVFQQLEIDYVIGESHRELLPNLSGPAAILRIFGVTREGHGVCCHVHGFEPYFYISCPPGMGPDDISLFHRTLEARMKEVNRNSKAPNFVRRIELVQKRSILDRGIQIDGFGMKSFLTYESNVLFALRFMIDCNVVGGNWIETGLLILTPFLNTHHRYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQVANLVTLQGEDQPFFRNVMTLNSCSPIAGVDVLSFDTEREVLLAWRDLIREVDPDIIIGYNICKFDLPYLIEVMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKHAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNLPPEHFNKTPSGEIFVKPNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPSVEAAMILGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKVLRRWSQGRVSLEELEDLSSASVLKDIGPFKEFSSAIGASGDRDASARKDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENSIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNGGIMKFAKKQLTCIGCKALLRETKLSAHTAKEEKRNFTAKRLQVCLIWRWFLGGFGHSAKNAKELVVLLHHSGHPLAKFPTSFHLGVIENYH 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9981709 9999517 + Lsi01G011750.1 Lsi01g01175 653833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01175 1033 Gene3D - 704 820 IPR042087 -
Lsi01g01175 1033 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 355 976 - -
Lsi01g01175 1033 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 81 356 - -
Lsi01g01175 1033 CDD POLBc_delta 477 918 - -
Lsi01g01175 1033 PRINTS DNA-directed DNA-polymerase family B signature 587 599 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lsi01g01175 1033 PRINTS DNA-directed DNA-polymerase family B signature 495 508 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lsi01g01175 1033 PRINTS DNA-directed DNA-polymerase family B signature 648 656 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lsi01g01175 1033 SUPERFAMILY DNA/RNA polymerases 461 919 IPR043502 -
Lsi01g01175 1033 SUPERFAMILY Ribonuclease H-like 109 442 IPR012337 -
Lsi01g01175 1033 Pfam DNA polymerase family B 854 917 IPR006134 GO:0000166|GO:0003677
Lsi01g01175 1033 Pfam DNA polymerase family B 436 805 IPR006134 GO:0000166|GO:0003677
Lsi01g01175 1033 SMART polmehr3 256 662 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lsi01g01175 1033 Gene3D Palm domain of DNA polymerase 480 703 IPR023211 -
Lsi01g01175 1033 Gene3D - 78 148 - -
Lsi01g01175 1033 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 355 976 - -
Lsi01g01175 1033 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 81 356 - -
Lsi01g01175 1033 Gene3D - 357 479 IPR036397 GO:0003676
Lsi01g01175 1033 Gene3D DNA Polymerase, chain B, domain 1 181 231 - -
Lsi01g01175 1033 ProSitePatterns DNA polymerase family B signature. 650 658 IPR017964 GO:0000166|GO:0003676
Lsi01g01175 1033 Gene3D - 846 927 IPR042087 -
Lsi01g01175 1033 MobiDBLite consensus disorder prediction 1 31 - -
Lsi01g01175 1033 Pfam DNA polymerase family B, exonuclease domain 118 381 IPR006133 -
Lsi01g01175 1033 Gene3D - 257 356 IPR036397 GO:0003676
Lsi01g01175 1033 Gene3D Helix hairpin bin 551 603 - -
Lsi01g01175 1033 TIGRFAM pol2: DNA polymerase (pol2) 470 806 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01175 Lsi-Chr1:9981709 Lsi11g00572 Lsi-Chr11:6055992 1.10E-71 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01175 K02327 - csv:101219332 1656.73