Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01180 ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTCTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCCTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGTACCAGAAACGGCCTAACCTCGACCTCCGTGATTCAGAGGACCGCCAATCGGTCGCCGCCGCAGGCGGAGGAGGAATTAGAAGCTGTCGTCGTCGAAATCGGACTCGATCAGGAAACGATTACGAGTTATCCGAAATTGCTGTATTCGGAAGCGAAGCTTCAGAAGAACGATTCGACTGCGTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGGATGTTCTTCGGCTTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCGTTGATCCGTGGCTGAGGCTTCATCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCAACGCCTTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGTCGACGCGATTGA 519 53.56 MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLTSTSVIQRTANRSPPQAEEELEAVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10032251 10032769 - Lsi01G011800.1 Lsi01g01180 653838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01180 172 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Lsi01g01180 172 SUPERFAMILY RING/U-box 83 154 - -
Lsi01g01180 172 SMART ring_2 107 148 IPR001841 -
Lsi01g01180 172 CDD RING-H2_PA-TM-RING 106 149 - -
Lsi01g01180 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 153 IPR013083 -
Lsi01g01180 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 170 IPR045899 -
Lsi01g01180 172 Pfam Ring finger domain 107 149 IPR001841 -
Lsi01g01180 172 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 5 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01180 Lsi-Chr1:10032251 Lsi08g00926 Lsi-Chr8:17650994 8.28E-40 dispersed
Lsi01g01180 Lsi-Chr1:10032251 Lsi03g01806 Lsi-Chr3:29493392 1.08E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01180 - - csv:101218618 286.574