Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01181 ATGAACGATCTGTTTTCCACCGATTCCTTCCGCCGTGAGCACCACCGCCATGACTCCATCGAGATTCCCGACCACGCACCGTCGTCAACTACGATCAATCTCAACAGTTTCTTCGACGACGTGGAGTCCGTGAAGGCGGAATTGACGGAGCTCGAACGCCTCTATCGAAGCCTCCAAAATTCTCACGAACAGAGCAAAACTCTCCACAATTCGAAGGCGATTAAGGATCTTCGATCGCGAATGGAATCCGATGTAACTTTGGCTTTGAAGAAGGCTAGGTTTATCAAGCTCCGATTGGAGGAACTAGACCGGTCCAATGCAGAGAACCGGAATCTTCCTGGTTGTGGCTATGGCTCCTCCGCCGACCGGTCAAGAACTTCCGTCGTCAATGGATTGAGGAAGAAGCTGTGTGATTCGATGGAAAGTTTCAACAAATTGAGAGAGGAGATTTCGTCGACGTATAAGGAGACGATTGAACGAAGGTATTTCACAATTACAGGGGAAAATCCTGATGAGAAGACTGTTGATTTGTTGATTTCTACAGGGGAAAGCGAAACATTCCTGCAAAAAGCAATACAAAAGCAAGGAAGAAGAAGAGTTTTGGAAACAATTCAAGAGATTCAAGAAAGGCATGACGCAGTGAAGGACATAGAGAAGAATTTGAGAGAGCTGCACCAAGTTTTCATGGACATGGCGGTGCTGGTTCAAGCGCAGGGGCAGCAGTTGGACGATATCGAGAGCCAAGTGACTCGAGCCAACTCCGCCGTCAAGCGTGGCACAACTGAGCTACAAACTGCAAGATACTACCAGAAAAACACTCGCAAATGGTTCTGCATAGGCATCATTGTTCTTGCAGTAATTCTCATCATCATTATCGTTTCCATCGTCCTTTCGAAGAAGTAG 903 47.07 MNDLFSTDSFRREHHRHDSIEIPDHAPSSTTINLNSFFDDVESVKAELTELERLYRSLQNSHEQSKTLHNSKAIKDLRSRMESDVTLALKKARFIKLRLEELDRSNAENRNLPGCGYGSSADRSRTSVVNGLRKKLCDSMESFNKLREEISSTYKETIERRYFTITGENPDEKTVDLLISTGESETFLQKAIQKQGRRRVLETIQEIQERHDAVKDIEKNLRELHQVFMDMAVLVQAQGQQLDDIESQVTRANSAVKRGTTELQTARYYQKNTRKWFCIGIIVLAVILIIIIVSIVLSKK 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10035743 10038691 - Lsi01G011810.1 Lsi01g01181 653839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01181 300 CDD SynN 34 191 IPR006011 GO:0016020
Lsi01g01181 300 PANTHER SYNTAXIN 14 294 IPR045242 -
Lsi01g01181 300 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Lsi01g01181 300 SMART tSNARE_6 199 266 IPR000727 -
Lsi01g01181 300 Gene3D - 32 164 - -
Lsi01g01181 300 Coils Coil 34 68 - -
Lsi01g01181 300 CDD SNARE_syntaxin1-like 203 265 - -
Lsi01g01181 300 Gene3D - 190 298 - -
Lsi01g01181 300 Coils Coil 204 224 - -
Lsi01g01181 300 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lsi01g01181 300 Pfam SNARE domain 241 292 IPR000727 -
Lsi01g01181 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Lsi01g01181 300 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
Lsi01g01181 300 PANTHER SYNTAXIN-121 14 294 - -
Lsi01g01181 300 SMART SynN_4 29 155 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01181 Lsi-Chr1:10035743 Lsi01g00668 Lsi-Chr1:5379274 1.14E-48 dispersed
Lsi01g01659 Lsi-Chr1:15160644 Lsi01g01181 Lsi-Chr1:10035743 2.50E-78 transposed
Lsi02g00706 Lsi-Chr2:6322594 Lsi01g01181 Lsi-Chr1:10035743 5.17E-115 transposed
Lsi03g01319 Lsi-Chr3:23988017 Lsi01g01181 Lsi-Chr1:10035743 2.13E-82 transposed
Lsi10g00145 Lsi-Chr10:2351402 Lsi01g01181 Lsi-Chr1:10035743 2.83E-55 transposed
Lsi01g01181 Lsi-Chr1:10035743 Lsi03g01810 Lsi-Chr3:29539565 1.39E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01181 K08486 - csv:101213199 494.197