Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01185 ATGGGGGTTCCTCAGGCCATGAAAATTCTGACCGAGAGAGCCGCACTCGTGCGAGAGTCGCTGCAAAAGAGCCAGAATGTCACCGAAAACATGGTCTCCATTCTTGGCTCCTTCGACTACCGTCTCTCCGCCCTCGAAACCGCAATGCGCCCTACTCAGATAAGAACTCATTCAATTCGGAGGGCGCATGAGAATATTGACAAGACATTGAAGGCTGCAGAAAGTATGCTAGCTCAGTTTGATCTAACACGCAAGGCCGAGGCGAAAATACTCAGAGGGCCACATGAGGACTTAGAAATGTACTTGGAAGCAATTGATCAATTACGAAGCACAAATCGCTACTTTACTGGGAACAAAATTTTCAAAAGTAACGATGTTATTCTTAACCACACAAGCAACTTGCTTATTAAAGCCATTTCAAAGCTGGAAGATGAGTTCAGACAGCTTTTAACAAATTACAGTAAGCCAGTGGAACCTGATCGTCTGTTCGATTGCCTCCCCAACTCTTTGCGTCCATCGTCAGCATCTGCGCAGCATGGTGATAGTGGTAGCAAAAATAATTCTGACCATCACAACAAAAGCTTAGAAACTGCCATCTTCATTCCCCCAACTCTTATTCCTCCCAGGGTTCTTCCATTGTTGCATGATTTGGCCCAACAAATGATTCTGGCTGGTCATCAGCAGCAACTGTTTAGAATATACAGGGATACTCGCGCTTCAGTTTTAGAACAGAGTCTTAGGAAATTAGGTGTTGAGAGGCTGAGCAAGGATGATGTCCAGAAAATGCAGTGGGAGGCTCTTGAAGCTAAGATTGGGAACTGGATACATTACATGCGCATTGCTGTCAAATTGCTGTTTGCTGGGGAAAGGAAAATATGTGATCAAATATTTGACGGTGCAGACTCTCTCCAGGATCAATGCTTCGCAGATGTGACTTCAAACAGTGTGTCAGTGCTACTAAGTTTTGGAGAGGCAATTGCCAAAAGCAAGAGATCTCCAGAAAAATTGTTTGTTCTTTTAGACATGTTTGAAATAATGCGAGAACTGCAGTCTGAGATTGAAACACTCTTTGGAAGTAAAGCATGCGTTGAAATGCGGGATTCTGCATTGAGCTTAACCACACGCCTTGCCGAGACAGCTCAAGAGACCTTTGTTGATTTTGAAGAAGCCGTAGAAAAAGATGCCACAAAAACTGCTGTTCTTGATGGGACTGTTCATCCCTTGACTAGTTATGTGATAAATTACGTCAAGTTTTTGTTTGACTACCAATCTACGTTGAAGCAACTATTCCAAGATTTTGAAGCTAGTGATCCAGATGCTCAGCTAGCAGTGGTAACTACAAGAATTATGCAGGCCCTTCAGACTAATCTTGACGGGAAATCTAAGCAATATAGGGATCCTGCACTAACTCAATTGTTTCTGATGAACAATATTCACTATATAGTGAGATCCGTCCGAAGATCGGAGGCAAAGGATTTGTTGGGTGATGACTGGGTGCAGATACATCGAAGGATTGTGCAGCAGCATGCAAATCAATACAAGCGGATTTCTTGGGCAAAGATTTTGCAGTGCCTTACAGTTCAGGCCTCAGGTAGTGGTGGTGCTTCGGGAGATGCTAGCAGTGGACTTTCAAGAGCTATGGTGAAAGATAGGTTTAAGACTTTTAACATCCAATTTGAAGAGCTTCATCAACGGCAATCTCAGTGGACAGTTCCAGACAGTGAGTTGCGGGAGTCATTGAGGCCTATGATTGAGAATGGGAAAAATCCTCAAAAATACATCAGATATTCACCCGAGGATCTTGAGCGTATGCTAAATGAATTTTTTGAGGGCAAGACATTCAGTGAGCAAAAGCGCTAG 1860 43.49 MGVPQAMKILTERAALVRESLQKSQNVTENMVSILGSFDYRLSALETAMRPTQIRTHSIRRAHENIDKTLKAAESMLAQFDLTRKAEAKILRGPHEDLEMYLEAIDQLRSTNRYFTGNKIFKSNDVILNHTSNLLIKAISKLEDEFRQLLTNYSKPVEPDRLFDCLPNSLRPSSASAQHGDSGSKNNSDHHNKSLETAIFIPPTLIPPRVLPLLHDLAQQMILAGHQQQLFRIYRDTRASVLEQSLRKLGVERLSKDDVQKMQWEALEAKIGNWIHYMRIAVKLLFAGERKICDQIFDGADSLQDQCFADVTSNSVSVLLSFGEAIAKSKRSPEKLFVLLDMFEIMRELQSEIETLFGSKACVEMRDSALSLTTRLAETAQETFVDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQDFEASDPDAQLAVVTTRIMQALQTNLDGKSKQYRDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQASGSGGASGDASSGLSRAMVKDRFKTFNIQFEELHQRQSQWTVPDSELRESLRPMIENGKNPQKYIRYSPEDLERMLNEFFEGKTFSEQKR 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10070994 10078703 + Lsi01G011850.1 Lsi01g01185 653843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01185 619 MobiDBLite consensus disorder prediction 172 191 - -
Lsi01g01185 619 PANTHER EXOCYST COMPLEX PROTEIN EXO70 37 616 IPR004140 GO:0000145|GO:0006887
Lsi01g01185 619 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 37 616 - -
Lsi01g01185 619 SUPERFAMILY Cullin repeat-like 76 610 IPR016159 -
Lsi01g01185 619 Gene3D Exocyst complex component Exo70 75 619 - -
Lsi01g01185 619 Pfam Exo70 exocyst complex subunit 273 584 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01185 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:105436019 1149.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01185 Lsi-Chr1:10070994 Lsi04g00159 Lsi-Chr4:1783319 0 dispersed
Lsi07g00994 Lsi-Chr7:13795587 Lsi01g01185 Lsi-Chr1:10070994 2.75E-84 dispersed
Lsi08g01534 Lsi-Chr8:23364258 Lsi01g01185 Lsi-Chr1:10070994 7.44E-42 dispersed
Lsi01g01185 Lsi-Chr1:10070994 Lsi02g01397 Lsi-Chr2:19197156 2.00E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g903 Blo01g01242 . . . . . . . . . . Cma07g00826 Car03g01010 Car07g00813 Sed14g0274 Cpe10g00315 . Bhi03g01779 Tan03g1260 Cmetu08g1948 . Hepe04g1072 . . . . . . . . . . . Cone13ag1144 Cone19ag1123 Lsi01g01185 Csa06g02721 Chy08g00976 . . . . . . . Bma01g02005 . . Cmo03g01110 Cmo07g00855 . . . . . Cpe19g00500 . . . . . . . . . . . . . . . . . Cme08g01155
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g00159 . 12 682 EXO70 exocyst subunit family AT5G03540 75.3 4.8e-278 953.7
Lsi01g01185 . 1 619 EXO70 exocyst subunit family AT5G03540 68.7 1.2e-252 869.4
Lsi01g01185 . 1 619 EXO70 exocyst subunit family AT5G52340 77.4 8.7e-285 976.1
Lsi04g00159 . 14 682 EXO70 exocyst subunit family AT5G52340 70.2 1.5e-260 895.6
Lsi01g01185 . 145 612 EXO70 exocyst subunit family AT5G52350 60.2 5.1e-162 568.2
Lsi04g00159 . 183 682 EXO70 exocyst subunit family AT5G52350 57.9 5.4e-156 548.1
Lsi02g01250 . 1 626 EXO70 exocyst subunit family AT5G58430 67.5 4.2e-247 850.9
Lsi02g01250 . 1 625 EXO70 exocyst subunit family AT1G07000 52.1 5.3e-175 611.3
Lsi07g00009 . 77 663 EXO70 exocyst subunit family AT5G13150 54.5 2.2e-174 609.4
Lsi09g00909 . 106 718 EXO70 exocyst subunit family AT5G13990 54.5 5.2e-190 661.4
Lsi07g00662 CCT,ECH 9 609 EXO70 exocyst subunit family AT1G72470 66.2 2.9e-216 748.4
Lsi07g00662 CCT,ECH 9 607 EXO70 exocyst subunit family AT1G54090 63.0 1.0e-208 723.4
Lsi07g00662 CCT,ECH 9 608 EXO70 exocyst subunit family AT3G14090 63.7 9.0e-218 753.4
Lsi02g00502 . 18 656 EXO70 exocyst subunit family AT5G50380 62.4 4.7e-228 787.7
Lsi06g00498 . 13 650 EXO70 exocyst subunit family AT5G50380 61.5 1.2e-223 773.1
Lsi08g01120 . 13 682 EXO70 exocyst subunit family AT4G31540 73.9 4.5e-295 1010.4
Lsi04g00846 . 58 611 EXO70 exocyst subunit family AT3G55150 51.3 1.3e-150 530.4
Lsi10g01339 . 33 610 EXO70 exocyst subunit family AT3G55150 50.1 3.7e-150 528.9
Lsi04g00846 . 31 609 EXO70 exocyst subunit family AT2G39380 51.1 5.5e-154 541.6
Lsi03g02079 . 26 630 EXO70 exocyst subunit family AT3G09520 56.1 7.3e-183 637.5
Lsi10g01339 . 23 604 EXO70 exocyst subunit family AT5G59730 50.1 1.1e-154 543.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01185 Lsi_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0