Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01185 ATGGGGGTTCCTCAGGCCATGAAAATTCTGACCGAGAGAGCCGCACTCGTGCGAGAGTCGCTGCAAAAGAGCCAGAATGTCACCGAAAACATGGTCTCCATTCTTGGCTCCTTCGACTACCGTCTCTCCGCCCTCGAAACCGCAATGCGCCCTACTCAGATAAGAACTCATTCAATTCGGAGGGCGCATGAGAATATTGACAAGACATTGAAGGCTGCAGAAAGTATGCTAGCTCAGTTTGATCTAACACGCAAGGCCGAGGCGAAAATACTCAGAGGGCCACATGAGGACTTAGAAATGTACTTGGAAGCAATTGATCAATTACGAAGCACAAATCGCTACTTTACTGGGAACAAAATTTTCAAAAGTAACGATGTTATTCTTAACCACACAAGCAACTTGCTTATTAAAGCCATTTCAAAGCTGGAAGATGAGTTCAGACAGCTTTTAACAAATTACAGTAAGCCAGTGGAACCTGATCGTCTGTTCGATTGCCTCCCCAACTCTTTGCGTCCATCGTCAGCATCTGCGCAGCATGGTGATAGTGGTAGCAAAAATAATTCTGACCATCACAACAAAAGCTTAGAAACTGCCATCTTCATTCCCCCAACTCTTATTCCTCCCAGGGTTCTTCCATTGTTGCATGATTTGGCCCAACAAATGATTCTGGCTGGTCATCAGCAGCAACTGTTTAGAATATACAGGGATACTCGCGCTTCAGTTTTAGAACAGAGTCTTAGGAAATTAGGTGTTGAGAGGCTGAGCAAGGATGATGTCCAGAAAATGCAGTGGGAGGCTCTTGAAGCTAAGATTGGGAACTGGATACATTACATGCGCATTGCTGTCAAATTGCTGTTTGCTGGGGAAAGGAAAATATGTGATCAAATATTTGACGGTGCAGACTCTCTCCAGGATCAATGCTTCGCAGATGTGACTTCAAACAGTGTGTCAGTGCTACTAAGTTTTGGAGAGGCAATTGCCAAAAGCAAGAGATCTCCAGAAAAATTGTTTGTTCTTTTAGACATGTTTGAAATAATGCGAGAACTGCAGTCTGAGATTGAAACACTCTTTGGAAGTAAAGCATGCGTTGAAATGCGGGATTCTGCATTGAGCTTAACCACACGCCTTGCCGAGACAGCTCAAGAGACCTTTGTTGATTTTGAAGAAGCCGTAGAAAAAGATGCCACAAAAACTGCTGTTCTTGATGGGACTGTTCATCCCTTGACTAGTTATGTGATAAATTACGTCAAGTTTTTGTTTGACTACCAATCTACGTTGAAGCAACTATTCCAAGATTTTGAAGCTAGTGATCCAGATGCTCAGCTAGCAGTGGTAACTACAAGAATTATGCAGGCCCTTCAGACTAATCTTGACGGGAAATCTAAGCAATATAGGGATCCTGCACTAACTCAATTGTTTCTGATGAACAATATTCACTATATAGTGAGATCCGTCCGAAGATCGGAGGCAAAGGATTTGTTGGGTGATGACTGGGTGCAGATACATCGAAGGATTGTGCAGCAGCATGCAAATCAATACAAGCGGATTTCTTGGGCAAAGATTTTGCAGTGCCTTACAGTTCAGGCCTCAGGTAGTGGTGGTGCTTCGGGAGATGCTAGCAGTGGACTTTCAAGAGCTATGGTGAAAGATAGGTTTAAGACTTTTAACATCCAATTTGAAGAGCTTCATCAACGGCAATCTCAGTGGACAGTTCCAGACAGTGAGTTGCGGGAGTCATTGAGGCCTATGATTGAGAATGGGAAAAATCCTCAAAAATACATCAGATATTCACCCGAGGATCTTGAGCGTATGCTAAATGAATTTTTTGAGGGCAAGACATTCAGTGAGCAAAAGCGCTAG 1860 43.49 MGVPQAMKILTERAALVRESLQKSQNVTENMVSILGSFDYRLSALETAMRPTQIRTHSIRRAHENIDKTLKAAESMLAQFDLTRKAEAKILRGPHEDLEMYLEAIDQLRSTNRYFTGNKIFKSNDVILNHTSNLLIKAISKLEDEFRQLLTNYSKPVEPDRLFDCLPNSLRPSSASAQHGDSGSKNNSDHHNKSLETAIFIPPTLIPPRVLPLLHDLAQQMILAGHQQQLFRIYRDTRASVLEQSLRKLGVERLSKDDVQKMQWEALEAKIGNWIHYMRIAVKLLFAGERKICDQIFDGADSLQDQCFADVTSNSVSVLLSFGEAIAKSKRSPEKLFVLLDMFEIMRELQSEIETLFGSKACVEMRDSALSLTTRLAETAQETFVDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQDFEASDPDAQLAVVTTRIMQALQTNLDGKSKQYRDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQASGSGGASGDASSGLSRAMVKDRFKTFNIQFEELHQRQSQWTVPDSELRESLRPMIENGKNPQKYIRYSPEDLERMLNEFFEGKTFSEQKR 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10070994 10078703 + Lsi01G011850.1 Lsi01g01185 653843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01185 619 MobiDBLite consensus disorder prediction 172 191 - -
Lsi01g01185 619 PANTHER EXOCYST COMPLEX PROTEIN EXO70 37 616 IPR004140 GO:0000145|GO:0006887
Lsi01g01185 619 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 37 616 - -
Lsi01g01185 619 SUPERFAMILY Cullin repeat-like 76 610 IPR016159 -
Lsi01g01185 619 Gene3D Exocyst complex component Exo70 75 619 - -
Lsi01g01185 619 Pfam Exo70 exocyst complex subunit 273 584 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01185 Lsi-Chr1:10070994 Lsi04g00159 Lsi-Chr4:1783319 0 dispersed
Lsi07g00994 Lsi-Chr7:13795587 Lsi01g01185 Lsi-Chr1:10070994 2.75E-84 dispersed
Lsi08g01534 Lsi-Chr8:23364258 Lsi01g01185 Lsi-Chr1:10070994 7.44E-42 dispersed
Lsi01g01185 Lsi-Chr1:10070994 Lsi02g01397 Lsi-Chr2:19197156 2.00E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01185 K07195 - csv:105436019 1149.81