Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01191 ATGGCGGATTCATCTCTTCACCTTCTCTCCAATGGCGGATTCATCCACCATTCTTCTCCTTCCCCTCTTTTCCCCTCTCTTCCCCGCTCCAGAACCCTCCAATTCCCCGTCCTCTCCAATTTCAGAATCTCTTTCGTCTTCCCCTCCAAACTCCCTCCTCGCAACCCCACCATTCCTCCCCTCTCGCCCCCGCTTCCCCCGCCTCCGCCCCACAACGACCGCCACTCTGACTTTCAGGAGAAAATGCTCTTCCTCGACTCCATCGGCATCGACTTCCTCTCCGTCATCAAAGACCACCCTCCCATCGCTACCGCCTCCCTCCCCGACATCAGATCAGCCGTCGATTTCATGACCTCGATGAATTTCACCGCCCTCGAGTTCCGTCGAATCGTCGGCATGTGCCCCGAGATTCTCACCTCTCGCGCTTCCGACCTCGTCCCTATCTTCACCTTCCTCCTCCGCGAAGCTCGAGTCGACGGCTCCGACATCAAACGCGTTATCAATCGACGCCCTAGATTGCTCGCCTGTAGCGTAAAAGATCGGCTCCGTCCAACTCTCTACTTCCTACAAAGCATCGGCATATCCGAGGTACATAAACACACTTCCTTACTCTCCTGTAGCGTGGAAGAGAAGTTGATTCCGAGAATTGAGTTCTTCGAAAACCTAGGGTTTTCTCGGCGGGATGCTTTGATAATGTTCCGGCGATTCCCGCAGCTATTCTGCTACAGCATAAAGGAGAATCTGGAGCCGAAACTGAATTACTTCGTGGTGGAAATGGGAAGAGAATTGAAGGAATTGAAGGAATTTCCTCATTACTTCTCGTTTAGCTTAGAGAACAGGATCAAGCCGAGACATCAAAGCTGTGTGGAGAAGGGAGTTTGTTTTCCATTGCCGGAGTTGTTGAAAACCAGTGAGATGAAATTCCGGGAGAAATTGGAGCCGTGGGAGTGGGAGTGGGAGTCGGAGCCACTTCCTCAGTCCCAAACTGCCCAGATCCTGCCGCCTCTCAAGCGCCAGCTTGCTTTTGATTCCGCTAAGCCGCCGTTTGTTCCTCTGGGTCATTATTACCACTTCGGTGGCGGTTCTTCCAATGCTATTGATCAACAACCTGATACCATCGTTGTTAAACCTCTTAAACCAAAGCAGAAGGGTGTCATGTATAACAATGTAGTTGAATTGAATGACTACATTCATGATCAGGGATCTTCAAAAGATGCTCTTAGTTCTGTTCAAACACCTGTGTCTGCCAAAGGAGGAAGGGTGTACAATAGGTCAAAGGCTTCAAAGAGAACTACATCTGGGCCTCAAACACCCATCTCAGACACTAGCACTTATTCTCCCCTTACTCCAGCTGGAAACTGTCGGTATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTACGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAAGGATTCAATCAACAAATTCCAGGAAATGTGGACAGTGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGCAATGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATATCCAAAAGTGGCTCTTTGTAACAGAAGAAGACATTAAAAACTTGCCTTGCTTTCAGAATGAGACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTCCAGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCAATCATTGGGGAGAGTAGTAGAAACGAAATTGAACCTCAAGCTCATCTTTCCCAACACAGCAGCAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGTGGAATGATGAAGATTATACCTTCAGATGTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGACATGTGGAGAACAGATTCTACAGCAGATATTGCATGGGATCAATCAGATATGGTTCCTCATGACTTCTTAATATCTGATGTCAGTGCCCAAAGGCCAAGACCAGGAAGCCCACATTCAGAGACAGCTGAAGCACCATCT 2331 46.12 MADSSLHLLSNGGFIHHSSPSPLFPSLPRSRTLQFPVLSNFRISFVFPSKLPPRNPTIPPLSPPLPPPPPHNDRHSDFQEKMLFLDSIGIDFLSVIKDHPPIATASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEILTSRASDLVPIFTFLLREARVDGSDIKRVINRRPRLLACSVKDRLRPTLYFLQSIGISEVHKHTSLLSCSVEEKLIPRIEFFENLGFSRRDALIMFRRFPQLFCYSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKTSEMKFREKLEPWEWEWESEPLPQSQTAQILPPLKRQLAFDSAKPPFVPLGHYYHFGGGSSNAIDQQPDTIVVKPLKPKQKGVMYNNVVELNDYIHDQGSSKDALSSVQTPVSAKGGRVYNRSKASKRTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLITQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDTSMLQVDVENLSFEERRLDDKIRAMQERLRNLSEDENIQKWLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLATEAIIGESSRNEIEPQAHLSQHSSSCDVNGSNEFPGGMMKIIPSDVDNDADYWLLSDAEVSITDMWRTDSTADIAWDQSDMVPHDFLISDVSAQRPRPGSPHSETAEAPS 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10116350 10128814 + Lsi01G011910.1 Lsi01g01191 653849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01191 777 Gene3D - 449 522 IPR036388 -
Lsi01g01191 777 MobiDBLite consensus disorder prediction 402 418 - -
Lsi01g01191 777 Coils Coil 540 567 - -
Lsi01g01191 777 MobiDBLite consensus disorder prediction 425 446 - -
Lsi01g01191 777 Pfam E2F/DP family winged-helix DNA-binding domain 457 520 IPR003316 GO:0005667|GO:0006355
Lsi01g01191 777 Gene3D Transcription termination factor 3, mitochondrial 71 318 IPR038538 -
Lsi01g01191 777 Gene3D - 527 637 - -
Lsi01g01191 777 SMART E2F_TDP_2 455 520 IPR003316 GO:0005667|GO:0006355
Lsi01g01191 777 PANTHER TRANSCRIPTION FACTOR E2FB 333 768 - -
Lsi01g01191 777 CDD E2F_DD 536 637 IPR032198 GO:0046983
Lsi01g01191 777 Pfam mTERF 153 308 IPR003690 GO:0003690|GO:0006355
Lsi01g01191 777 SUPERFAMILY Winged helix DNA-binding domain 455 518 IPR036390 -
Lsi01g01191 777 MobiDBLite consensus disorder prediction 402 446 - -
Lsi01g01191 777 SUPERFAMILY E2F-DP heterodimerization region 534 637 IPR037241 -
Lsi01g01191 777 PANTHER TRANSCRIPTION FACTOR E2F 333 768 IPR015633 GO:0000978|GO:0006357
Lsi01g01191 777 MobiDBLite consensus disorder prediction 758 777 - -
Lsi01g01191 777 SMART mt_12 230 262 IPR003690 GO:0003690|GO:0006355
Lsi01g01191 777 SMART mt_12 263 294 IPR003690 GO:0003690|GO:0006355
Lsi01g01191 777 SMART mt_12 164 195 IPR003690 GO:0003690|GO:0006355
Lsi01g01191 777 SMART mt_12 128 159 IPR003690 GO:0003690|GO:0006355
Lsi01g01191 777 SMART mt_12 93 123 IPR003690 GO:0003690|GO:0006355
Lsi01g01191 777 SMART mt_12 196 225 IPR003690 GO:0003690|GO:0006355
Lsi01g01191 777 Pfam E2F transcription factor CC-MB domain 536 636 IPR032198 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01191 K06620 E2F3; transcription factor E2F3 - csv:101212480 1112.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01191 Lsi-Chr1:10116350 Lsi02g01849 Lsi-Chr2:24242705 4.15E-22 dispersed
Lsi06g01514 Lsi-Chr6:25572238 Lsi01g01191 Lsi-Chr1:10116350 2.62E-06 dispersed
Lsi01g01046 Lsi-Chr1:8665774 Lsi01g01191 Lsi-Chr1:10116350 4.04E-23 transposed
Lsi02g00918 Lsi-Chr2:8827583 Lsi01g01191 Lsi-Chr1:10116350 3.22E-61 transposed
Lsi02g00991 Lsi-Chr2:10009060 Lsi01g01191 Lsi-Chr1:10116350 1.68E-08 transposed
Lsi02g01259 Lsi-Chr2:16734038 Lsi01g01191 Lsi-Chr1:10116350 3.22E-18 transposed
Lsi02g01756 Lsi-Chr2:23286665 Lsi01g01191 Lsi-Chr1:10116350 4.34E-06 transposed
Lsi03g01318 Lsi-Chr3:23981399 Lsi01g01191 Lsi-Chr1:10116350 1.98E-06 transposed
Lsi04g00408 Lsi-Chr4:3982822 Lsi01g01191 Lsi-Chr1:10116350 1.02E-51 transposed
Lsi08g01329 Lsi-Chr8:21589823 Lsi01g01191 Lsi-Chr1:10116350 4.43E-13 transposed
Lsi11g01065 Lsi-Chr11:18579831 Lsi01g01191 Lsi-Chr1:10116350 4.66E-35 transposed
Lsi11g01104 Lsi-Chr11:19182980 Lsi01g01191 Lsi-Chr1:10116350 1.24E-10 transposed
Lsi11g01318 Lsi-Chr11:21803671 Lsi01g01191 Lsi-Chr1:10116350 3.53E-08 transposed
Lsi08g01330 Lsi-Chr8:21591913 Lsi01g01191 Lsi-Chr1:10116350 1.35E-35 transposed
Lsi01g01191 Lsi-Chr1:10116350 Lsi10g01142 Lsi-Chr10:15738236 3.07E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g917 . Blo12g00527 . Bda03g00671 . . . . . . . Cma07g00828 Car03g01015 Car07g00815 . Cpe10g00310 . Bhi03g01787 Tan03g1249 . . . . . Cla04g01021 Cam04g1063 Cec04g1183 Cco04g1250 Clacu04g1090 Cmu04g1074 Cre04g1133 Cone3ag0151 Cone10ag0135 . . Lsi01g01191 Csa06g02714 Chy08g00971 . . . . . Bpe04g00633 . . Bma04g00537 . Cmo03g01117 Cmo07g00858 . . . . . Cpe19g00497 . . . . . . . . . . . . . . . . . Cme08g01161
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g00346 CCT 537 909 E2F-DP Transcription Factor Family AT3G48160 50.8 1.3e-92 337.0
Lsi01g01191 . 332 766 E2F-DP Transcription Factor Family AT2G36010 54.9 3.1e-117 419.1
Lsi10g01142 . 21 490 E2F-DP Transcription Factor Family AT2G36010 50.2 1.9e-114 409.8
Lsi10g01142 . 10 495 E2F-DP Transcription Factor Family AT5G22220 52.1 3.7e-107 385.6
Lsi01g01191 . 328 773 E2F-DP Transcription Factor Family AT5G22220 50.1 6.5e-96 348.2
Lsi10g01142 . 10 495 E2F-DP Transcription Factor Family AT5G22220 52.1 3.7e-107 385.6
Lsi01g01191 . 328 773 E2F-DP Transcription Factor Family AT5G22220 50.1 6.5e-96 348.2
Lsi01g01191 . 332 766 E2F-DP Transcription Factor Family AT2G36010 54.9 3.1e-117 419.1
Lsi10g01142 . 21 490 E2F-DP Transcription Factor Family AT2G36010 50.2 1.9e-114 409.8
Lsi02g00346 CCT 537 909 E2F-DP Transcription Factor Family AT3G48160 50.8 1.3e-92 337.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24665 PF02536 mTERF 5.90E-34 No_clan Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01191 Lsi_Chr01 FPKM 3.758594 4.785168 1.93976 2.177836 2.248698 2.333858 3.080341 4.791252 7.270992 5.520988