Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01191 ATGGCGGATTCATCTCTTCACCTTCTCTCCAATGGCGGATTCATCCACCATTCTTCTCCTTCCCCTCTTTTCCCCTCTCTTCCCCGCTCCAGAACCCTCCAATTCCCCGTCCTCTCCAATTTCAGAATCTCTTTCGTCTTCCCCTCCAAACTCCCTCCTCGCAACCCCACCATTCCTCCCCTCTCGCCCCCGCTTCCCCCGCCTCCGCCCCACAACGACCGCCACTCTGACTTTCAGGAGAAAATGCTCTTCCTCGACTCCATCGGCATCGACTTCCTCTCCGTCATCAAAGACCACCCTCCCATCGCTACCGCCTCCCTCCCCGACATCAGATCAGCCGTCGATTTCATGACCTCGATGAATTTCACCGCCCTCGAGTTCCGTCGAATCGTCGGCATGTGCCCCGAGATTCTCACCTCTCGCGCTTCCGACCTCGTCCCTATCTTCACCTTCCTCCTCCGCGAAGCTCGAGTCGACGGCTCCGACATCAAACGCGTTATCAATCGACGCCCTAGATTGCTCGCCTGTAGCGTAAAAGATCGGCTCCGTCCAACTCTCTACTTCCTACAAAGCATCGGCATATCCGAGGTACATAAACACACTTCCTTACTCTCCTGTAGCGTGGAAGAGAAGTTGATTCCGAGAATTGAGTTCTTCGAAAACCTAGGGTTTTCTCGGCGGGATGCTTTGATAATGTTCCGGCGATTCCCGCAGCTATTCTGCTACAGCATAAAGGAGAATCTGGAGCCGAAACTGAATTACTTCGTGGTGGAAATGGGAAGAGAATTGAAGGAATTGAAGGAATTTCCTCATTACTTCTCGTTTAGCTTAGAGAACAGGATCAAGCCGAGACATCAAAGCTGTGTGGAGAAGGGAGTTTGTTTTCCATTGCCGGAGTTGTTGAAAACCAGTGAGATGAAATTCCGGGAGAAATTGGAGCCGTGGGAGTGGGAGTGGGAGTCGGAGCCACTTCCTCAGTCCCAAACTGCCCAGATCCTGCCGCCTCTCAAGCGCCAGCTTGCTTTTGATTCCGCTAAGCCGCCGTTTGTTCCTCTGGGTCATTATTACCACTTCGGTGGCGGTTCTTCCAATGCTATTGATCAACAACCTGATACCATCGTTGTTAAACCTCTTAAACCAAAGCAGAAGGGTGTCATGTATAACAATGTAGTTGAATTGAATGACTACATTCATGATCAGGGATCTTCAAAAGATGCTCTTAGTTCTGTTCAAACACCTGTGTCTGCCAAAGGAGGAAGGGTGTACAATAGGTCAAAGGCTTCAAAGAGAACTACATCTGGGCCTCAAACACCCATCTCAGACACTAGCACTTATTCTCCCCTTACTCCAGCTGGAAACTGTCGGTATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTACGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAAGGATTCAATCAACAAATTCCAGGAAATGTGGACAGTGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGCAATGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATATCCAAAAGTGGCTCTTTGTAACAGAAGAAGACATTAAAAACTTGCCTTGCTTTCAGAATGAGACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTCCAGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCAATCATTGGGGAGAGTAGTAGAAACGAAATTGAACCTCAAGCTCATCTTTCCCAACACAGCAGCAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGTGGAATGATGAAGATTATACCTTCAGATGTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGACATGTGGAGAACAGATTCTACAGCAGATATTGCATGGGATCAATCAGATATGGTTCCTCATGACTTCTTAATATCTGATGTCAGTGCCCAAAGGCCAAGACCAGGAAGCCCACATTCAGAGACAGCTGAAGCACCATCT 2331 46.12 MADSSLHLLSNGGFIHHSSPSPLFPSLPRSRTLQFPVLSNFRISFVFPSKLPPRNPTIPPLSPPLPPPPPHNDRHSDFQEKMLFLDSIGIDFLSVIKDHPPIATASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEILTSRASDLVPIFTFLLREARVDGSDIKRVINRRPRLLACSVKDRLRPTLYFLQSIGISEVHKHTSLLSCSVEEKLIPRIEFFENLGFSRRDALIMFRRFPQLFCYSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKTSEMKFREKLEPWEWEWESEPLPQSQTAQILPPLKRQLAFDSAKPPFVPLGHYYHFGGGSSNAIDQQPDTIVVKPLKPKQKGVMYNNVVELNDYIHDQGSSKDALSSVQTPVSAKGGRVYNRSKASKRTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLITQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDTSMLQVDVENLSFEERRLDDKIRAMQERLRNLSEDENIQKWLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLATEAIIGESSRNEIEPQAHLSQHSSSCDVNGSNEFPGGMMKIIPSDVDNDADYWLLSDAEVSITDMWRTDSTADIAWDQSDMVPHDFLISDVSAQRPRPGSPHSETAEAPS 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10116350 10128814 + Lsi01G011910.1 Lsi01g01191 653849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01191 777 Gene3D - 449 522 IPR036388 -
Lsi01g01191 777 MobiDBLite consensus disorder prediction 402 418 - -
Lsi01g01191 777 Coils Coil 540 567 - -
Lsi01g01191 777 MobiDBLite consensus disorder prediction 425 446 - -
Lsi01g01191 777 Pfam E2F/DP family winged-helix DNA-binding domain 457 520 IPR003316 GO:0005667|GO:0006355
Lsi01g01191 777 Gene3D Transcription termination factor 3, mitochondrial 71 318 IPR038538 -
Lsi01g01191 777 Gene3D - 527 637 - -
Lsi01g01191 777 SMART E2F_TDP_2 455 520 IPR003316 GO:0005667|GO:0006355
Lsi01g01191 777 PANTHER TRANSCRIPTION FACTOR E2FB 333 768 - -
Lsi01g01191 777 CDD E2F_DD 536 637 IPR032198 GO:0046983
Lsi01g01191 777 Pfam mTERF 153 308 IPR003690 GO:0003690|GO:0006355
Lsi01g01191 777 SUPERFAMILY Winged helix DNA-binding domain 455 518 IPR036390 -
Lsi01g01191 777 MobiDBLite consensus disorder prediction 402 446 - -
Lsi01g01191 777 SUPERFAMILY E2F-DP heterodimerization region 534 637 IPR037241 -
Lsi01g01191 777 PANTHER TRANSCRIPTION FACTOR E2F 333 768 IPR015633 GO:0000978|GO:0006357
Lsi01g01191 777 MobiDBLite consensus disorder prediction 758 777 - -
Lsi01g01191 777 SMART mt_12 230 262 IPR003690 GO:0003690|GO:0006355
Lsi01g01191 777 SMART mt_12 263 294 IPR003690 GO:0003690|GO:0006355
Lsi01g01191 777 SMART mt_12 164 195 IPR003690 GO:0003690|GO:0006355
Lsi01g01191 777 SMART mt_12 128 159 IPR003690 GO:0003690|GO:0006355
Lsi01g01191 777 SMART mt_12 93 123 IPR003690 GO:0003690|GO:0006355
Lsi01g01191 777 SMART mt_12 196 225 IPR003690 GO:0003690|GO:0006355
Lsi01g01191 777 Pfam E2F transcription factor CC-MB domain 536 636 IPR032198 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01191 Lsi-Chr1:10116350 Lsi02g01849 Lsi-Chr2:24242705 4.15E-22 dispersed
Lsi06g01514 Lsi-Chr6:25572238 Lsi01g01191 Lsi-Chr1:10116350 2.62E-06 dispersed
Lsi01g01046 Lsi-Chr1:8665774 Lsi01g01191 Lsi-Chr1:10116350 4.04E-23 transposed
Lsi02g00918 Lsi-Chr2:8827583 Lsi01g01191 Lsi-Chr1:10116350 3.22E-61 transposed
Lsi02g00991 Lsi-Chr2:10009060 Lsi01g01191 Lsi-Chr1:10116350 1.68E-08 transposed
Lsi02g01259 Lsi-Chr2:16734038 Lsi01g01191 Lsi-Chr1:10116350 3.22E-18 transposed
Lsi02g01756 Lsi-Chr2:23286665 Lsi01g01191 Lsi-Chr1:10116350 4.34E-06 transposed
Lsi03g01318 Lsi-Chr3:23981399 Lsi01g01191 Lsi-Chr1:10116350 1.98E-06 transposed
Lsi04g00408 Lsi-Chr4:3982822 Lsi01g01191 Lsi-Chr1:10116350 1.02E-51 transposed
Lsi08g01329 Lsi-Chr8:21589823 Lsi01g01191 Lsi-Chr1:10116350 4.43E-13 transposed
Lsi11g01065 Lsi-Chr11:18579831 Lsi01g01191 Lsi-Chr1:10116350 4.66E-35 transposed
Lsi11g01104 Lsi-Chr11:19182980 Lsi01g01191 Lsi-Chr1:10116350 1.24E-10 transposed
Lsi11g01318 Lsi-Chr11:21803671 Lsi01g01191 Lsi-Chr1:10116350 3.53E-08 transposed
Lsi08g01330 Lsi-Chr8:21591913 Lsi01g01191 Lsi-Chr1:10116350 1.35E-35 transposed
Lsi01g01191 Lsi-Chr1:10116350 Lsi10g01142 Lsi-Chr10:15738236 3.07E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24665 PF02536 mTERF 5.90E-34 No_clan Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01191 K06620 - csv:101212480 1112.44