Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01229 ATGGCGGAAGAGCACAGATGCCAAGCACCTGAAGGCCACCGTCTCTGCGCCAATAATTGCGGCTTCTTCGGTAGCCCAGCTACCATGGATCTCTGCTCCAAATGTTACAGAGACTTCCGTCTTAAAGAACAAGAACAAGCCTCCACCAAATCCACCATCGAAGCCGCTCTCTCGGCCTCATCATCTCCTTCTCCTTCCTCTTCTCCAATCGATCCTCCCCCCGTTCCTCCTGTCGTTGCCTTGTCCCCGCCGGATGCCACCACAGATCTGACCATCCCTCCCCTCGCGGCGGTCGGATCTGAGGCCGCAAATCAACCGAACCCGAACCCGAACCGTTGTTCATCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAGATGCAGATGCGGAACCACGTTCTGTGGAGCTCATAGGTACCCGGAGAAACACGGCTGCACCTTCGACTTCAAGTCAATCGGAAGAGAGGAGATCGCTCGAGCGAACCCCGTCGTCAAAGCCGATAAACTGGAAAGGATTTGA 519 55.68 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDFRLKEQEQASTKSTIEAALSASSSPSPSSSPIDPPPVPPVVALSPPDATTDLTIPPLAAVGSEAANQPNPNPNRCSSCRKKVGLTGFRCRCGTTFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10496040 10496558 - Lsi01G012290.1 Lsi01g01229 653887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01229 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Lsi01g01229 172 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Lsi01g01229 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Lsi01g01229 172 MobiDBLite consensus disorder prediction 66 81 - -
Lsi01g01229 172 MobiDBLite consensus disorder prediction 46 90 - -
Lsi01g01229 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 172 - -
Lsi01g01229 172 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Lsi01g01229 172 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Lsi01g01229 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Lsi01g01229 172 SUPERFAMILY AN1-like Zinc finger 104 167 IPR035896 -
Lsi01g01229 172 MobiDBLite consensus disorder prediction 48 65 - -
Lsi01g01229 172 Gene3D - 1 69 - -
Lsi01g01229 172 Gene3D - 94 168 IPR035896 -
Lsi01g01229 172 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 6 1 172 - -
Lsi01g01229 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01229 Lsi-Chr1:10496040 Lsi10g01159 Lsi-Chr10:15891245 1.31E-58 dispersed
Lsi01g01229 Lsi-Chr1:10496040 Lsi09g00363 Lsi-Chr9:3741755 9.87E-51 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01229 - - bhj:120073734 306.99