Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01238 ATGATTGGCAGTGAAAAGATAGCGAGAGAGTCCAAAATCTACAGCTATGGAAAGAGCTTCAATGGGTTCGCCGCAAGGCTTTTGCCTCACGAAGCCACCAAGCTCTCAAATGAGGAGGGTGTGGTTTCGGTATTTCAGAGCAGAAAACAGAGAGTTGTGACAACAAGATCCTGGGACTTTTTAGGACTAAATCATCATTATTCCAAACGTAACCCTAAAATTGAGTCTAATCTCATTGTCGCCGTTTTGGATACGGGGATTTGGATTGACAGTCCTAGTTTCAGCGATGAAGGCTATGGTCCACCTCCCCCTAAATGGAAGGGCAAATGCGTCACTGGTCCCAACTTCACAGCCTGCAACAACGTAAGCTCATATCCAGAGTCGAGCGTGGCGGACACGGAGGGGCATGGCTCTCACACGGCGTCGACGGTGGCAGGCTCGGCGGTGGAGGGGGCGAGCTTGTATGGTCTGGCCAAAGGGACGGCGCGCGGCGGCGTGCCTTCAGCTCGAATTGCAGTCTACAAAGTGTGTTGGAGTATTTTCTGCAGCGAAATGGACGTTCTTGCTGGCTTCGATGAGGCCATCGCCGACGGCGTCGATTTCATTTCCGTCTCCATAGGCTCGCCGCCGATGGATTTCTTCAGGGACGGCCAAGCAATTGGGGCTTTTCATGCCATGAAGAAGGGAATATTGACGTCCTGCGCCGCCGGCAATGACGGCCCTGAATTGTCCACCGTCGAGAATGTGGCGCCCTGGATTATGACCGTCGCTGCAACGGCCATTGATAGACGGTTCGTCACCGCTTTCAAACTCGATCCCTACATCAAATCCTTAGGAGGCACTGGAGTCATTCAACTCACTCAACAACAAACTGATTATTCCTCCATTTTGCTTCTTCCTGGGGCTTCCATCTCTTCTCTCTCTGGCAAATACATCGATCTTTATATCAACTCCACCAAGAATCCTAAAGCTATCATTTATAAGAGTGAAACTGTCAAAATTGATGCTCCTTTTGTTGCTTCTTTCTCATCTAGAGGGCCTCAGTTTATAAGGATAGACATCTTGGCTGCTTATACAAAACTAGCAAGTTTGACAGGGGATATGTCAGACAGTAGATATAGTTTATTCACTGTAATGTCAGGTACATCCATGGCCTGTCCTCATGCTACGGCGGCTGCTGCGTACGTTAAGTCATTCCACCCTGACTGGTCTCCGGCTGCGGTCAAGTCTGCTCTCATGACCACTGGTAGAGTCTTTCATGTCACCATATTTCTATCAGCTAATGTTCAAGCCTGA 1296 49.31 MIGSEKIARESKIYSYGKSFNGFAARLLPHEATKLSNEEGVVSVFQSRKQRVVTTRSWDFLGLNHHYSKRNPKIESNLIVAVLDTGIWIDSPSFSDEGYGPPPPKWKGKCVTGPNFTACNNVSSYPESSVADTEGHGSHTASTVAGSAVEGASLYGLAKGTARGGVPSARIAVYKVCWSIFCSEMDVLAGFDEAIADGVDFISVSIGSPPMDFFRDGQAIGAFHAMKKGILTSCAAGNDGPELSTVENVAPWIMTVAATAIDRRFVTAFKLDPYIKSLGGTGVIQLTQQQTDYSSILLLPGASISSLSGKYIDLYINSTKNPKAIIYKSETVKIDAPFVASFSSRGPQFIRIDILAAYTKLASLTGDMSDSRYSLFTVMSGTSMACPHATAAAAYVKSFHPDWSPAAVKSALMTTGRVFHVTIFLSANVQA 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10559807 10563854 + Lsi01G012380.1 Lsi01g01238 653896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01238 431 PRINTS Subtilisin serine protease family (S8) signature 380 396 IPR015500 -
Lsi01g01238 431 PRINTS Subtilisin serine protease family (S8) signature 132 145 IPR015500 -
Lsi01g01238 431 PRINTS Subtilisin serine protease family (S8) signature 75 94 IPR015500 -
Lsi01g01238 431 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 52 IPR037045 -
Lsi01g01238 431 ProSitePatterns Serine proteases, subtilase family, serine active site. 381 391 IPR023828 -
Lsi01g01238 431 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 2 269 IPR045051 -
Lsi01g01238 431 PANTHER CUCUMISIN PROTEIN 2 269 - -
Lsi01g01238 431 PANTHER CUCUMISIN PROTEIN 273 417 - -
Lsi01g01238 431 ProSiteProfiles Serine proteases, subtilase domain profile. 57 431 - -
Lsi01g01238 431 SUPERFAMILY Subtilisin-like 67 421 IPR036852 GO:0004252|GO:0006508
Lsi01g01238 431 Gene3D - 276 332 - -
Lsi01g01238 431 Gene3D - 262 271 - -
Lsi01g01238 431 Gene3D Peptidase S8/S53 domain 333 417 IPR036852 GO:0004252|GO:0006508
Lsi01g01238 431 Gene3D Peptidase S8/S53 domain 78 261 IPR036852 GO:0004252|GO:0006508
Lsi01g01238 431 CDD Peptidases_S8_3 54 415 IPR034197 -
Lsi01g01238 431 Pfam Subtilase family 76 416 IPR000209 GO:0006508|GO:0008236
Lsi01g01238 431 Pfam Peptidase inhibitor I9 7 49 IPR010259 -
Lsi01g01238 431 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 273 417 IPR045051 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01238 Lsi-Chr1:10559807 Lsi09g00086 Lsi-Chr9:764376 1.94E-06 dispersed
Lsi01g01238 Lsi-Chr1:10559807 Lsi03g01911 Lsi-Chr3:30472760 6.94E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01238 - - csv:101207592 484.182