Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01248 ATGTTTTTCTCCAAAACCAAAACTCTTAACTCTACTCCAAACCCTCCTCGTTTCCGAGGCGTCCGCCGTCGGAGCTCCGGCAAGTGGGTTTCCGAGATTCGAGAGCCGAGGAAGCCCAATAGGATTTGGTTGGGAACTTTTCCTACCCCGGAAATGGCTGCCATCGCTTACGACGTGGCAGCCCTAGCTCTCAAGGGCTCCAGTGCTGACCTCAACTTTCCTAATTTAGCATCTTCCTTACCAGTGCCAGCCTCTATCGCCGCACGTGACATTCAAGCTGCAGCCACGTCTGCTGCGACGGCTATAGGGGCAGCTGCAGCTGCAATAGGGTTAGATGGTAATTCCGTGAGTGCGAGTAGAGAAAATGATGATGGGGAAGGAGATGGAGGAGGATGTGGGGAGGAATTAGTAGAGGGAGGATTTGTAGATGAAGATATGATATTTGATATGCCAAATATTTTGATGAACATGGCTGAAGGAATGCTTCTCACTCCTCCATCCTTCAACTTCAACATGAATGCTCCAAATGATTTTGAATATCCTCCAACCTATACTCAAGATAACCTTTGGGAATTTTAA 579 48.01 MFFSKTKTLNSTPNPPRFRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAIAYDVAALALKGSSADLNFPNLASSLPVPASIAARDIQAAATSAATAIGAAAAAIGLDGNSVSASRENDDGEGDGGGCGEELVEGGFVDEDMIFDMPNILMNMAEGMLLTPPSFNFNMNAPNDFEYPPTYTQDNLWEF 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10668807 10669385 + Lsi01G012480.1 Lsi01g01248 653906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01248 192 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Lsi01g01248 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 6 192 - -
Lsi01g01248 192 MobiDBLite consensus disorder prediction 1 15 - -
Lsi01g01248 192 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Lsi01g01248 192 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Lsi01g01248 192 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Lsi01g01248 192 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Lsi01g01248 192 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Lsi01g01248 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 192 - -
Lsi01g01248 192 MobiDBLite consensus disorder prediction 116 136 - -
Lsi01g01248 192 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Lsi01g01248 192 MobiDBLite consensus disorder prediction 1 23 - -
Lsi01g01248 192 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01248 Lsi03g01929 CCT
Lsi01g01248 Lsi03g01929 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01248 Lsi-Chr1:10668807 Lsi03g01929 Lsi-Chr3:30689276 2.46E-58 dispersed
Lsi01g01248 Lsi-Chr1:10668807 Lsi03g01928 Lsi-Chr3:30676717 1.23E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24670 PF00847 AP2 1.50E-12 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01248 - - bhj:120074356 296.975