Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01250 ATGGAAATGCCTGGAAGGAGGTCAGATTACTCGCTTTTAAGTCAAATTCCGGACGAGGAGGTTGGAACGGGAGCTTCCACTTCCTTTTACGAGTCCATAGCAGCTGGCGGAAACGTTTACAAGGGGAGAACCGATAGAGTTTTTGATTGGGACGGGAGTGGTGATCACAGGTTAAACACGCAAGCGAATCGGATAGGGAACCTGTATTCATGGATTGGTTTGCAGAGGCATTCTAGTGGAAGCAGCTACGATGGTAGCTCTCTCTCCAGTGATTACTACGCACCGACGCTCTCAAACGCTGCCGCAAATGAGATCAATGCATTGGGATATATCCACGACGATGAATTCAGAGTGAAAGCTTTGGGAAGTGGAGGTTCATCTGGAAAGAGTTGGGCGCAGCAGACGGAAGAGAGTTATCAATTGCAGCAGGCTTTGGCAATCAGGCTTTCTTCAGAGGCTACCTGTGCCGATGATCCCAACTTTATGGATCCGATGCCAGACGAGGCAGCTTTAAGATCGTTGTCGAGTTCAGCTGAGACCATCTCGCATCGATTCTGGGTAAATGGATGCATGTCATATTTTGAGAAAGTGCCGGATGGTTTTTATCTAATTCATGGGATGGACCCGTATGTATGGTCATTATGCACCAATCTGCAAGTGGATGGTCGTATACCGTCATTTGAATCTCTGAAGACAGTTGATTCCAGAATTGGTTCATCAATTGAAGTAGTTTTGATAGATCGGCATAGTGATGCTAGCTTAAAGGAACTGCAAAACAGGGTGCATAATATTTCTTCTAGTTGTATAACCACAAAAGAGGTTGCAGATCATTTAGCAAAGCTGGTATGCAATCACTTGGGGGGTTCAGTTTTTGAGGGAGAAGATGACTTGGTTTCTTCCTGGAGGGAATGCAGTGATGACTTAAAAGAATGTTTGGGATCTGCTGTGATTCCCTTATGCAGCTTATCTGTTGGCCTTTGCAGACATCGTGCTCTTTTATTCAAAGTGTTAGCTGATTCAATTGATTTGCCCTGTCGAATTGCTAAGGGCTGTAAATATTGCACTAGAGACGATGCTTCATCTTGCCTTGTTAAGTTCGGGCTTGATAGGGAATATCTCATTGATCTGATTGGCAAGCCAGGTTGCTTATGCGAACCTGATTCTTTGCTCAATGGTCCATCATCCATCTCAATTTCTTCACCATTGCGATTTCCAAGACTAAAACCTATTGAATCTACCGTTGATTTCAGGTCACTGGCCAAACAGTATTTCTTGGATAGCCAATCACTTAATATTGTATTTGATGAAGCTTCTTCAGGGAATGTTGTATCTGGGAAGGATGCTGCGTTCTCTGTCTATCAAAGGCCATTAAATAGGAAGGATGGAGATGGAAAAAACATAGTGCTTACTGGTGATAGGGACAAAAGTTCTCAGTTATTGAATCCAAAATCTGCCCTACTGAATACTCAAGATGGAAAGTCTGAGCAATTTAGATCATGTGACACTTCTCAATCTAGTCTACAGTCTACCCCTTTTGTAGAAAACATAGTCCCTTTAAACCATATCTCACAGATTGGTTCCAGAGATTCTGAGCCTCTCTTAGCATTGTCTCATCTGAGGGTGGATCATGCTAACAATTTATCATTCGTTGACGGTAGTCAACTTATTAGAAAACCAAATGAGCTTTCCTTTGGCATAGAAGATTTGGTTATTCCATGGGAAGATCTTGTTTTGAGGGAGAAAATTGGAGCAGGTTCTTTTGGGACTGTATATCACGCTGATTGGCATGGCTCAGATGTTGCTGTGAAGATTCTGATGGAACAAGACCTACATGCAGAACGTTTTGATGAATTTCTTAGGGAGGTTGCCATAATGAAATGTCTACGACATCCGAACATTGTTCTCTTTATGGGTGCAGTCACAGAACCTCCAAACTTGTCCATTGTCACAGAATATTTATCAAGGGGTAGTTTGCACAGGCTTTTGCATAGACCTGGGGCACGAGAAGTCTTAGATGAGAGACGACGGTTAAACATGGCATATGATGTTGTTTGTGATTTTGGGCTTTCACGCTTAAAGGCACACACATTTCTTTCGTCAAAATCAGCTGCTGGGACTCCTGAGTGGATGGCACCAGAAGTTCTCCGCGATGAGCCATCAAATGAGAAATCGGATGTTTATAGCTTTGGTGTGATACTGTGGGAGCTTGCTACATTGCAACAACCATGGGGCAACTTGAACCCAGCGCAGGTTGTGGCAGCCGTGGGTTTCAAAGGCAAAAGGCTTGAGATCTCACGTGATTTAAATCCTCGAGTTGCTACTATTATAGAGGCTTGCTTTGCCAATGAGCCCTGGAAACGTCCTTCCTTTTATGAAATAATGGAATCGTTGAAGCCATTGATCAAACCTTCTACACCTCATCAAGTTCGCTCAAACATGTCATCAGTTACTCAATGA 2457 43.3 MEMPGRRSDYSLLSQIPDEEVGTGASTSFYESIAAGGNVYKGRTDRVFDWDGSGDHRLNTQANRIGNLYSWIGLQRHSSGSSYDGSSLSSDYYAPTLSNAAANEINALGYIHDDEFRVKALGSGGSSGKSWAQQTEESYQLQQALAIRLSSEATCADDPNFMDPMPDEAALRSLSSSAETISHRFWVNGCMSYFEKVPDGFYLIHGMDPYVWSLCTNLQVDGRIPSFESLKTVDSRIGSSIEVVLIDRHSDASLKELQNRVHNISSSCITTKEVADHLAKLVCNHLGGSVFEGEDDLVSSWRECSDDLKECLGSAVIPLCSLSVGLCRHRALLFKVLADSIDLPCRIAKGCKYCTRDDASSCLVKFGLDREYLIDLIGKPGCLCEPDSLLNGPSSISISSPLRFPRLKPIESTVDFRSLAKQYFLDSQSLNIVFDEASSGNVVSGKDAAFSVYQRPLNRKDGDGKNIVLTGDRDKSSQLLNPKSALLNTQDGKSEQFRSCDTSQSSLQSTPFVENIVPLNHISQIGSRDSEPLLALSHLRVDHANNLSFVDGSQLIRKPNELSFGIEDLVIPWEDLVLREKIGAGSFGTVYHADWHGSDVAVKILMEQDLHAERFDEFLREVAIMKCLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLHRLLHRPGAREVLDERRRLNMAYDVVCDFGLSRLKAHTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKGKRLEISRDLNPRVATIIEACFANEPWKRPSFYEIMESLKPLIKPSTPHQVRSNMSSVTQ 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10677564 10685700 - Lsi01G012500.1 Lsi01g01250 653908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01250 818 ProSiteProfiles Protein kinase domain profile. 576 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01250 818 CDD STKc_MAP3K-like 582 797 - -
Lsi01g01250 818 Pfam Protein tyrosine and serine/threonine kinase 577 683 IPR001245 GO:0004672|GO:0006468
Lsi01g01250 818 Pfam Protein tyrosine and serine/threonine kinase 684 797 IPR001245 GO:0004672|GO:0006468
Lsi01g01250 818 Gene3D Phosphorylase Kinase; domain 1 569 654 - -
Lsi01g01250 818 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 684 810 - -
Lsi01g01250 818 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 119 683 - -
Lsi01g01250 818 Gene3D Transferase(Phosphotransferase) domain 1 683 811 - -
Lsi01g01250 818 Pfam Ethylene-responsive protein kinase Le-CTR1 178 384 - -
Lsi01g01250 818 ProSitePatterns Protein kinases ATP-binding region signature. 582 603 IPR017441 GO:0005524
Lsi01g01250 818 SUPERFAMILY Protein kinase-like (PK-like) 554 797 IPR011009 -
Lsi01g01250 818 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 684 810 - -
Lsi01g01250 818 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 119 683 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01250 Lsi03g01941 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01250 Lsi-Chr1:10677564 Lsi07g01075 Lsi-Chr7:16102866 1.29E-45 dispersed
Lsi02g00226 Lsi-Chr2:1899950 Lsi01g01250 Lsi-Chr1:10677564 1.58E-21 transposed
Lsi04g02284 Lsi-Chr4:29872057 Lsi01g01250 Lsi-Chr1:10677564 0 transposed
Lsi06g00200 Lsi-Chr6:2196603 Lsi01g01250 Lsi-Chr1:10677564 9.65E-13 transposed
Lsi09g01493 Lsi-Chr9:22981246 Lsi01g01250 Lsi-Chr1:10677564 2.37E-49 transposed
Lsi10g01592 Lsi-Chr10:20410574 Lsi01g01250 Lsi-Chr1:10677564 3.22E-36 transposed
Lsi01g01250 Lsi-Chr1:10677564 Lsi03g01941 Lsi-Chr3:30804861 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83282 PF14381 EDR1 2.30E-80 CL0125 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01250 K14510 - csv:101208800 1479.54