Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01261 ATGCATTCCAATCACTTGCTTCTCGAGGAGCCCATTCGGATGGCTTCCATTTTGGAGCCTTCCAAGGCTAGCTTCTTTCCTACAATGACAAAAATTGTTGGTACTCTGGGTCCTAAGTCTCGATCTGTCGAAGTTATTTCTGCGTGTTTGAGGGCTGGAATGTCGGTTGCTCGGTTCGACTTTTCATGGGGTGATCCGGATTACCATCAAGAGACTTTGGAAAATTTGAAGACGGCTGTTAAAAGCACCAAGAAACTTTGCGCTGTTATGCTGGATACAGCGGGTCCTGAGGTCGTTAAGAAAGGAGATACCCTTTTTCTTGGTCAGTATCTCTTCACTGGAAGTGAAACAACTTCTGTCTGGTTGGAGGTTTCCGAAGTGAAAGGAGATGATGTTGTTTGTGTGGTAAAGAACTCTGCCACGTTGGTTGGTACAATGTACACTTTGCATGCTGCTGAAATTCACATTGATCTTCCAACACTTACTGACAAAGATAAAGAGATTATAGCTACGTGGGGAGTAAAAAACAAGATTGACTTCCTCTCTCTGTCACATGCTAGACACGCGGAAGATGTTCGACAAGCTCGACAATTTCTTTCTAAGCTAGGCGACCTTAACCAAACTCAAATATTTGCAAAGATTGAAAGTGTAGAGGGTTTAACCCATTTTGACGATATACTACAAGAAGCAGATGGTATTATTCTTGCTCGTGGCAATTTGGGGTTAGATCTCCCACCTGAGAAGGTGTTCTTGTTTCAGAAAACTGCCCTTTATAGATGTAATATGGCTGGAAAGCCTGCTGTTTTAACTCGTGTGGTAGACAGCATGACTAACAACTTGAGACCTACACGTGCAGAAGCTACTGATGTTGCCAATGCTGTACTTGATGGAAGTGATGCAATTCTTCTTGGGGCTGAGACATTGCGTGGATTATATCCAGTAGAAACCGTTTCAACTGTTAGTAGAATATGCGCTGAGTCAGAGAAGGTTTTCAATCAAGATTTGTATTTCAAGAAGGCAGTCAAACATATCGGGGAGCCAATGTCACACTTGGAATCTATTGCCTCCTCAGCGGTTAGGGCAGCCATTAAAGTGAAGGCTTCCGTGATTATATGCTTTACTTCATCTGGAAGGGCCGCTAGGTTAATTGCAAAGTATAGGCCAACAATGCCCGTTATATCTGTTGTCATTCCAAGACTGAAGACAGATCAATTAAGGTGGAGTCTGAGTGGGGCATTTGAGGCTCGACAATCACTAATTATCAGAGGTCTTTTCCCTGTGCTTGCTGATCCTCAACACCTAGCGGACTCTAACAATGCAACGAATGAGTCTGTTCTGAAGGCTGCTCTAGATCATGGAAAGTTAGCAGGAATCATTAAGGCACATGATCGTGTAGTGGTTTGCCAGAAAGTTGGGGATGCATCAGTAGTAAAGATCATCGAGCTTGAAGATTAA 1455 43.3 MHSNHLLLEEPIRMASILEPSKASFFPTMTKIVGTLGPKSRSVEVISACLRAGMSVARFDFSWGDPDYHQETLENLKTAVKSTKKLCAVMLDTAGPEVVKKGDTLFLGQYLFTGSETTSVWLEVSEVKGDDVVCVVKNSATLVGTMYTLHAAEIHIDLPTLTDKDKEIIATWGVKNKIDFLSLSHARHAEDVRQARQFLSKLGDLNQTQIFAKIESVEGLTHFDDILQEADGIILARGNLGLDLPPEKVFLFQKTALYRCNMAGKPAVLTRVVDSMTNNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETVSTVSRICAESEKVFNQDLYFKKAVKHIGEPMSHLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPTMPVISVVIPRLKTDQLRWSLSGAFEARQSLIIRGLFPVLADPQHLADSNNATNESVLKAALDHGKLAGIIKAHDRVVVCQKVGDASVVKIIELED 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10841166 10852781 + Lsi01G012610.1 Lsi01g01261 653919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01261 484 Gene3D - 336 482 IPR036918 -
Lsi01g01261 484 Pfam Pyruvate kinase, barrel domain 30 98 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi01g01261 484 Pfam Pyruvate kinase, barrel domain 119 332 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi01g01261 484 SUPERFAMILY PK C-terminal domain-like 315 477 IPR036918 -
Lsi01g01261 484 Pfam Pyruvate kinase, alpha/beta domain 352 479 IPR015795 -
Lsi01g01261 484 PANTHER PYRUVATE KINASE 2 98 - -
Lsi01g01261 484 PANTHER PYRUVATE KINASE 2 98 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi01g01261 484 PRINTS Pyruvate kinase family signature 85 101 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi01g01261 484 PRINTS Pyruvate kinase family signature 237 261 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi01g01261 484 PRINTS Pyruvate kinase family signature 305 321 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi01g01261 484 PRINTS Pyruvate kinase family signature 286 304 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi01g01261 484 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 7 332 IPR015813 GO:0003824
Lsi01g01261 484 Gene3D - 29 330 IPR040442 -
Lsi01g01261 484 PANTHER PYRUVATE KINASE 98 484 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi01g01261 484 PANTHER PYRUVATE KINASE 98 484 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01261 Lsi-Chr1:10841166 Lsi04g00769 Lsi-Chr4:7204967 4.42E-128 dispersed
Lsi01g01260 Lsi-Chr1:10829635 Lsi01g01261 Lsi-Chr1:10841166 2.29E-30 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01261 K00873 - csv:101206620 907.131