Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01262 ATGGAATGGAATAATGGCAAAACTTTCACTCCCAATTTTGTTTCTCCACCACCACAATCTTCTTCCTCTGCATTGCTCTACAACTACAATTTGGATCAGTTTCCTGTTCCATCAGTGATAGAGACGACGACGAAGAAAGCGGCGGTGGAAGGTGAGCAAAATGTGGTTGGAGAATTGGATCAGAAGAAGAAGAGATTGAGTCAAGATCAGTTGGAGGCATTAGAGAGAAGCTTTCAAGAGGAAGTGAAGCTTGATCCTGATAGAAAAATGAAGCTGTCAAAGGAACTTGGGCTCCAACCAAGACAAATAGCTGTGTGGTTTCAAAATAGAAGAGCTCGCTGGAAAACTAAGCAACTTGAACATCTCTATGATACTCTCAAACAACAATTTGATACTATCTCTAAGGAAAAACACAATCTTCAACTAGAGGTCATCAGAGATAATTTAATTAATAACAACCCTGAAAAGACGGTGATGAAACTAAGAAGCATACTAAGAGAACAAGCAACGGGGAATCAAGGGTCGATAGGTTACACGGATGTCTCGGGGGAAGAGACAACGGTGGAGTGTACGTCGGTGGAGATTCTGAGCAGTAACAATTACATCTACAATAATGTGGAAGATTTCAACCAAATATCAGCTTCAGTTCCTCCATTCTGGTGGGGTGCTGAGGCTGCTCATCTGCCTTCTTATCCTTAA 699 41.63 MEWNNGKTFTPNFVSPPPQSSSSALLYNYNLDQFPVPSVIETTTKKAAVEGEQNVVGELDQKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISKEKHNLQLEVIRDNLINNNPEKTVMKLRSILREQATGNQGSIGYTDVSGEETTVECTSVEILSSNNYIYNNVEDFNQISASVPPFWWGAEAAHLPSYP 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10862737 10864730 + Lsi01G012620.1 Lsi01g01262 653920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01262 232 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Lsi01g01262 232 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677
Lsi01g01262 232 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677
Lsi01g01262 232 SUPERFAMILY Homeodomain-like 57 119 IPR009057 -
Lsi01g01262 232 SMART HOX_1 60 121 IPR001356 GO:0003677
Lsi01g01262 232 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 12 205 IPR045224 GO:0003700
Lsi01g01262 232 MobiDBLite consensus disorder prediction 1 21 - -
Lsi01g01262 232 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Lsi01g01262 232 Pfam Homeodomain 62 115 IPR001356 GO:0003677
Lsi01g01262 232 Gene3D - 57 122 - -
Lsi01g01262 232 CDD homeodomain 61 118 IPR001356 GO:0003677
Lsi01g01262 232 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 12 205 - -
Lsi01g01262 232 Coils Coil 123 143 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01262 Lsi03g01953 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01262 Lsi-Chr1:10862737 Lsi01g00792 Lsi-Chr1:6210199 1.79E-28 dispersed
Lsi01g01262 Lsi-Chr1:10862737 Lsi03g01953 Lsi-Chr3:30940390 2.03E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24671 PF00046 Homeodomain 1.80E-17 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01262 - - csv:101206385 331.643