Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01264 ATGGATGAGATTACAATCTTGAAACAGATTGCGGAGGGAGACCCTGATGATAAGAAATGTGTGGTGAAGCTTTTGGATCATTTCAAGCATTCAGGACCTAATGGGCAGCATGTTTGTATGATTTTTGAGTATTTGGGGGATAATCTGTTGACACTAATCAAGTATACTGACTACCGTGGATTACCAATTCATATGGTTAAGGAGATATGTTTTCATATATTGGTTGGCTTGGATTACTTGCATAAACAGCTCTCTATTATACACACTGATTTGAAGCCTGAAAATATTTTGTTACTGTCTATGATTGACCCATCAAAGGATCCTAGAAAATCTGGTATCCCTCTCATTCTTCCAACTAACAAGGACAAGGCTACATTTGAGTCTGGGATTCCAAAAGACATCAAATTTTCAAATGGAGATTTGACTAAACACCATAAGAGAGACATTCGAAGAAAGGCAAAGCAAGCTGCCCAGGGGTGTGTGGAGAAGGAAATGACTGCGGAGGCTGAGGCTAATCCAGAAACATCTTATACTGTTGAATCATCTCCAAATGCAAAGTCGAGTGCAGGTGCAACTGAGGAAAGGCAATCTAGTTCTTTCAATACAAACAGATCATCTGATGCCAATGGAGGAAAGGGTGGTGGGGAAGAAAATCAAGTTGTCAAGAAAGGGAGTCGATTGAGAAAGAAGATGTTATTGGCTTCGGTGGATCTGAATTGCAAGTTGGTTGACTTTGGAAATGCATGTTGGACATACAAACAGTTTACAAATGACATTCAGACTAGACAGTATAGGTGCCCAGAAGTTATCCTTGGATCAAAGTATTCTACATCAGCAGATCTTTGGTCCTTTGCATGTATTTGTTTTGAGCTTGCAACTGGTGATGTACTCTTTGATCCTCACAGTGGTGACAACTTCGACAGAGATGAGGACCACTTAGCTTTGATGATGGAACTTCTTGGAATGATGCCACGCAAGATTGCTTTCGGTGGTCGCTATTCTCGAGATTTCTTCAATCGATATGGAAATTTGAGGCACATCCGGAGGTTACGTTTCTGGCCATTAAACAAAGTTCTCATGGAGAAGTATGATTTCAACGAACAAGATGCAAATCAAATGGCAGAATTTCTAGTACCAATTCTTGATTTTGTTCCAGAAAACCGACCCTCTGCAGGCCAATGCCTTCTTCATCCATGGATGAATGCTGGGCCTCGGTTGTTGGAACCATCCATGAATCCTGCAACTTCTGAGGGGAAGAAGGAGAAGGAAGATATGGAGGCAATGGAGGTTGCAATGAGAAAAATTGCCATTAGTTCAGATTCTGAACAAGCTAATGATTCCCAGGAGTCCAAGTCCAAAACCAGTCAAAGTAATTCCTGA 1380 41.09 MDEITILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMIFEYLGDNLLTLIKYTDYRGLPIHMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRKSGIPLILPTNKDKATFESGIPKDIKFSNGDLTKHHKRDIRRKAKQAAQGCVEKEMTAEAEANPETSYTVESSPNAKSSAGATEERQSSSFNTNRSSDANGGKGGGEENQVVKKGSRLRKKMLLASVDLNCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRYGNLRHIRRLRFWPLNKVLMEKYDFNEQDANQMAEFLVPILDFVPENRPSAGQCLLHPWMNAGPRLLEPSMNPATSEGKKEKEDMEAMEVAMRKIAISSDSEQANDSQESKSKTSQSNS 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10881148 10883579 + Lsi01G012640.1 Lsi01g01264 653922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01264 459 MobiDBLite consensus disorder prediction 438 459 - -
Lsi01g01264 459 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 456 - -
Lsi01g01264 459 MobiDBLite consensus disorder prediction 433 459 - -
Lsi01g01264 459 MobiDBLite consensus disorder prediction 171 209 - -
Lsi01g01264 459 SMART serkin_6 4 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01264 459 MobiDBLite consensus disorder prediction 137 221 - -
Lsi01g01264 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Lsi01g01264 459 Gene3D Transferase(Phosphotransferase) domain 1 42 401 - -
Lsi01g01264 459 Gene3D Phosphorylase Kinase; domain 1 1 41 - -
Lsi01g01264 459 SUPERFAMILY Protein kinase-like (PK-like) 2 410 IPR011009 -
Lsi01g01264 459 ProSiteProfiles Protein kinase domain profile. 1 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01264 459 MobiDBLite consensus disorder prediction 406 425 - -
Lsi01g01264 459 PANTHER SERINE KINASE-LIKE PROTEIN 1 456 - -
Lsi01g01264 459 CDD STKc_SRPK 1 400 - -
Lsi01g01264 459 Pfam Protein kinase domain 233 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g01264 459 Pfam Protein kinase domain 3 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01264 Lsi-Chr1:10881148 Lsi10g01209 Lsi-Chr10:16359028 2.49E-54 dispersed
Lsi01g01264 Lsi-Chr1:10881148 Lsi04g00266 Lsi-Chr4:2738810 8.29E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83283 PF00069 Pkinase 4.20E-19 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01264 K08832 - csv:101206384 883.248