Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01267 ATGGTTTCCTATGATGGAAGAGCTCTAAAGATTGATGGAGAAAGAAAAATTATAATTTCTGGTTCTATCCATTATTCTCGTAGCACTCCTGAAATGTGGCCAATGTTGATGAAAAAAGTAAAAGAAGGTGGCATTAATGCAATCGAGACCTACGTATTTTGGAATGCTCATGAGCCTCAGCGTGGCCAATATGATTTTTCAGGAAATAATGATTTGGTAAAGTTTATTAAAACAGTTCAAGAACAAGGGCTTTATGCTATTCTTAGAATTGGACCTTATAGTGGAATTATGGCGGGTTTCCTGTTTGGTTGCATAACCTTCCCGGCATCCAGAACAAATAATCAAGTTTACATGGATGAGACGGAAAAATTCACCACATTAATAGTAAACAAAATGAAGGTTAATGAGCTATTTGCATCACAAGGAGGACCCATCATCGTCGCCCAGTGGTGTGCTGAGTTGGCACAATCTTACAACCTTAGTGTTCCTTGGATTATGTGTCAAGAAGGAGATGCTCCTCAGCCCATGATTAACACATGCAATGGCTTTTACTGTGACCAATTCAAACCCAATAGCAAAAATAGTCCCAAAATCTGGACTGAGAATTGGACTGGCTGGTCTCATTTGCAGTTGGACGTTTCTTCCAATATGGTGGGTTCTATGCAAAATTACTACATGTATCATGGTGGGACAAACTTTGGTAGAACTTCGAGAGGTCCTTACATTACAACATCTTATGATTACAATGCACCACTTGATGAATATAGGAATATGAACCAGCCAAAGTGGGGACATTTGAAGCAACCTCATGAACTTTTGATGTCTATGGAGAAAGTTTTGACCTATGGTGATGTTAAACACACTGATTATGGGCATTTGACAACAGTGAGTATCTCTGTCTGTCTCTCTAAGGTTATAATTTGGCAACAACTTACACCTACAAGGGGAAATGATGACAGCAATGTAACATTTGGAGATAGAACCTATAATATTCCTGGTTGGTCTGTCAGTATTCTTCCTGACTGCAAATCTGAAGTTTACAACACTGCAGAGGTAAACACTCAGACAACAATAAGGGAGAAGGTTTCAAGCCAAGAGGGAAAAATTAAGAAACCATTCAAATGGCAATGGAGAAACGAGAAAATAGAATACATGACACATGAGGGTGTAGTTGATGGAAGTGTTATCACTGCCAATAGGCTTCTTGATCAGAAGGTTGCTACAAATGATTCCAGTGATTACTTGTGGTACCTCACAGGTTTCCATCTTAAGGGATCCGATCCACTTTTTGACAAGACAGTAAAATTACGTGTTAAGACTCGTGGCCATATACTTCATGCCTTTGTCAACCAGAAGCATATTGGGTCACAGTATGCTCTAAATGGCAAATATGACTTCACATTTGAGAACAAAGTTAGGAATCTAAGACATGGATTCAACCAGATTGTCCCATTAAGTGCCACAGTTGGATTACCTAATGCTGAGGCAGGAGTTCATGGACCAGTTGAATTGGTTGCTGATGGAGAAACAATAAGGGATTTGTCAACCAATGAATGGGCATACAAAATTGGTTTGGATGGTGAAAAATATGAGTTTTTCGATCCTAATCATCAATTTAGGAAGCCCTGGCTCTCTGACAATCTCCCAGTAAACCAGAATTTCACTTGGTATAAGACCACTTTCCAAACTCCTAAAGGACGTGAAGGAGTGGTGGTAGATTTACTAGGCATGGGAAAGGGGCATGCTTGGGTAAATGGAAAAAGCATTGGAAGGTACTGGCCAAGTTATCTTGCAAATGAAAATGGCTGCTCTTCAAATTGTGACTTCCGTGGGGCTTACTACGATAGCAAGTGTGTCACTAACTGTGGAAAGCCTACTCAAAGATGGTATGTTTTCGAGTTTTTGGGCATACAATATAACTTGTATGATATGAATGTTTCAAGTGCTTTAAGTGAAAAGAAATTAATGATTGTTCAAAAATTACATAGGTACCATATTCCAAGATCATACCTGAACAAAGACCAAGAAAACACACTGATTTTGTTCGAAGAGTTTGGTGGGGTGCCATTGGACATAGATATCCAGACAACAAGAGTGAAAAATGTGTGTGCAAAGCCTTATGCAGGAAGCACATTGGAGCTATCATGCCATGATCGAATCATCACCGGTATCAATTTTGTGAGCTTTGGGAACCCTCGTGGAACTTGTGACAATTTCCAGAAGGGTACCTGTGATTCCTCCACTGCCTTCTCAGTCGTTGAAAAGGCATGTCTTGGAAAAACGAAATGTTCCATTGAAGTTACAAAAAGTAATCTTGGACAAACTGGTTGCAAGAAACATAATCGGCTTGCAGTTCAACCTTTCATTTTTATTGACTCTACAACTATCAAGCAAAGCACGCCAGACATAAACATCCGGTTCAAAAGGCATCTTCCTGATTGTTTCTTCAGCTTCTTCAAGAAGACCCCAACGACCCAAAACACTGATAAAGGAGGCATAATGCTCTGA 2508 39.67 MVSYDGRALKIDGERKIIISGSIHYSRSTPEMWPMLMKKVKEGGINAIETYVFWNAHEPQRGQYDFSGNNDLVKFIKTVQEQGLYAILRIGPYSGIMAGFLFGCITFPASRTNNQVYMDETEKFTTLIVNKMKVNELFASQGGPIIVAQWCAELAQSYNLSVPWIMCQEGDAPQPMINTCNGFYCDQFKPNSKNSPKIWTENWTGWSHLQLDVSSNMVGSMQNYYMYHGGTNFGRTSRGPYITTSYDYNAPLDEYRNMNQPKWGHLKQPHELLMSMEKVLTYGDVKHTDYGHLTTVSISVCLSKVIIWQQLTPTRGNDDSNVTFGDRTYNIPGWSVSILPDCKSEVYNTAEVNTQTTIREKVSSQEGKIKKPFKWQWRNEKIEYMTHEGVVDGSVITANRLLDQKVATNDSSDYLWYLTGFHLKGSDPLFDKTVKLRVKTRGHILHAFVNQKHIGSQYALNGKYDFTFENKVRNLRHGFNQIVPLSATVGLPNAEAGVHGPVELVADGETIRDLSTNEWAYKIGLDGEKYEFFDPNHQFRKPWLSDNLPVNQNFTWYKTTFQTPKGREGVVVDLLGMGKGHAWVNGKSIGRYWPSYLANENGCSSNCDFRGAYYDSKCVTNCGKPTQRWYVFEFLGIQYNLYDMNVSSALSEKKLMIVQKLHRYHIPRSYLNKDQENTLILFEEFGGVPLDIDIQTTRVKNVCAKPYAGSTLELSCHDRIITGINFVSFGNPRGTCDNFQKGTCDSSTAFSVVEKACLGKTKCSIEVTKSNLGQTGCKKHNRLAVQPFIFIDSTTIKQSTPDINIRFKRHLPDCFFSFFKKTPTTQNTDKGGIML 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10917953 10922991 + Lsi01G012670.1 Lsi01g01267 653925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01267 835 Gene3D - 509 603 - -
Lsi01g01267 835 SUPERFAMILY (Trans)glycosidases 2 276 IPR017853 -
Lsi01g01267 835 Pfam Beta-sandwich domain in beta galactosidase 282 352 IPR041392 -
Lsi01g01267 835 PANTHER BETA-GALACTOSIDASE 664 782 - -
Lsi01g01267 835 PANTHER BETA-GALACTOSIDASE 2 631 - -
Lsi01g01267 835 PRINTS Glycosyl hydrolase family 35 signature 579 595 IPR001944 GO:0004553|GO:0005975
Lsi01g01267 835 PRINTS Glycosyl hydrolase family 35 signature 552 566 IPR001944 GO:0004553|GO:0005975
Lsi01g01267 835 PRINTS Glycosyl hydrolase family 35 signature 12 29 IPR001944 GO:0004553|GO:0005975
Lsi01g01267 835 PRINTS Glycosyl hydrolase family 35 signature 33 51 IPR001944 GO:0004553|GO:0005975
Lsi01g01267 835 PRINTS Glycosyl hydrolase family 35 signature 140 155 IPR001944 GO:0004553|GO:0005975
Lsi01g01267 835 SUPERFAMILY Galactose-binding domain-like 336 505 IPR008979 -
Lsi01g01267 835 Gene3D - 690 786 IPR043159 -
Lsi01g01267 835 Gene3D Glycosidases 1 276 - -
Lsi01g01267 835 PANTHER BETA-GALACTOSIDASE RELATED 2 631 IPR001944 GO:0004553|GO:0005975
Lsi01g01267 835 SUPERFAMILY Galactose-binding domain-like 516 702 IPR008979 -
Lsi01g01267 835 Pfam Galactose binding lectin domain 714 781 IPR000922 GO:0030246
Lsi01g01267 835 Pfam Glycosyl hydrolases family 35 9 152 IPR031330 -
Lsi01g01267 835 PANTHER BETA-GALACTOSIDASE RELATED 664 782 IPR001944 GO:0004553|GO:0005975
Lsi01g01267 835 ProSiteProfiles SUEL-type lectin domain profile. 706 778 IPR000922 GO:0030246
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01267 - - - bhj:120076095 1203.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01267 Lsi-Chr1:10917953 Lsi05g01429 Lsi-Chr5:22192105 0 dispersed
Lsi01g01267 Lsi-Chr1:10917953 Lsi01g00636 Lsi-Chr1:5115985 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1074 Blo01g01301 . . Bda03g00692 . . . . . . . Cma07g00879 . . . . . Bhi03g01493 Tan03g1152 . . . . . . . . . . . . . . . . Lsi01g01267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005037 1 2 0 1 1 1 1 1 1 1 1 1 2 2 2 2 1 0 2 1 1 1 0 1 2 2 1 5 3 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01267 Lsi_Chr01 FPKM 4.539326 5.810153 2.857815 3.066459 2.95414 3.220603 3.207813 3.210208 2.809581 3.047597