Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01268 ATGCCCGTCAACCCTTCCCCTTCACCGCCACCGCCACTTCAATCTAAAACTTCTTTATCTCTCTGTAACCCGAAGCCCTCTCACCGCCCATTCAATTCCACTTCTCCCACCCAATTCCTTACTTGCCCACAACCCGTTGTCTCTATTTCAGAACCCCTTTTCGCTTCACGCCCTCTAATTTCCTCTCTTTCTCCAATTGCTTCCTCCTTCGATTTGCTTCGGCTATCCACACGCTACGGTGACCCTGACCTCGCCAGAGCTGTTCATGCTCGCTTTCTCAAGCTCGAGGAAGATATCTATCTGGGTAACGCTCTAATTGCGGCTTATCTCAGATTGGGACTTGTTCGAGATGCTGATAAAGTCTTTTCTGGCCTTTCGTGTCCTAATGTTGTGTCTTATACGGCGTTGATTTCTGGGTTTTCCAAGTCGAATCGGGAAGATGAAGCTGTTGAGCTTTTCTTTGCGATGTTGGACTCAGGTATTGAGCCGAATGAATATACTTTTGTTGCAATTTTGACTGCTTGCATTCGAAATATGGATTATCAGTTAGGTTCACAAATTCATGGTATTGTCGTCAAATTGGGGTTCCTGAATTGTGTTTTCATTTGCAATGCACTTATGGGATTCTATTGTAAGTGTGGGTTTTTGGAACTTGTACTTAGATTGTTCGACGAAATGCCTGAGAGAGACATCACTTCGTGGAATACTGTTTTCTCGAGTTTGGTGAAGGAGTTCAAGTATGATGAAGCGTTTGATTACTTTCGTGGTATGCAGCTATGTAAGGGACTCGGAGTGGATCATTTCTCTCTTTCTACTCTATTGACTGCTTGCGCTGGGAGCGTTAAATCAATGAAAGGCCAACAACTTCACGCTCTTGCTTTGAAGGTCGGGCTGGAGTCTCATTTGAGTGTGAGCAATTCCCTTATTGGTTTCTATACTAAATGTGGGAGTGTAAACGATGTAATGGATCTGTTTGAGTTAATGCCAGTAAGAGATGTTATTACTTGGACAGGAATGATTACATCATACATGGAATTCGGGAAGTTAGATTTGGCAGTCGAAGTCTTTAATAAGATGCCGGAGAGGAATTGTATTTCTTATAGTGCAGTTTTGGCAGGACTTTCTAGGAAAGGCGACGGGTCAAGAGCTCTAGAACTTTTCATTGAAATGTTGGAGGAGGGCTTGGAAATATCAGATTGCACATTGACTAGCATCATCAATGCTTGTGGGTTGCTCAAGAATTTTAAAGTTAGCCAGCAGATTCAAGGCTTCATCATAAAGTTTGGTATTTTGTCAAATTCTTGTATTGAAACAGCATTGGTTGACATGTATACAAGGTGTGGAAGGATGGACGATGCGGAAAAGATGTTTCATCAGCGTTCATTAGAGAATGACTACACTGCAATGCTAACATCAATGATTTGTGGGTATGCTCGAAATGGGCAACTTAATGAAGCAATCTCTCTCTTTCACTCTGGTCAATCTGAAGGAGCCATTGTTATGGATGAAGTTATATCGACATCAATACTCTCTCTTTGTGGGAGTATAGGCTTTCATGAGATGGGGAAGCAAATGCATTGCCATGCACTTAAGTCAGGTCTCATAACTGATACAGGGGTAGGGAATGCAACAATTAGCATGTACTCGAAGTGTTGGAATATGGATGATGCCGTCCATGTATTCAATACAATGGACATGCAAGACATAGTTTCCTGGAATGGTTTAGTTGCTGGGCATATGCTTCATAGGCAGGGTGATAAAGTCTTGGAAATCTGGAAGAAGATGGAGAAAGCAGGAATAAAACCTGACAATATCACGTTTGTTTTGATTATTTCAGCCTACAAACACACTGAATCGAATTTAGTTGATAGTTGTCGTAGTTTATTTGTCTCTATGGAAACTAAATACAATATCAAACCCACTTCAGAGCATTATGCCTCCTTTATCAGTGTTTTGGGTCGTTGGGGTCTTCTTGAAGAAGCTGAAGAAACAATCAGGAAGATGCCTTTTGAACCGGATGTTTATGTCTGGCGTGCTTTGCTTGATAGTTGTAGAGTCAATAAAAATGAAAGGCTGGAAAAACTTGCTGCAAAATACATACTGGCATTGGAACCAACAGATCCGTTTACTTACATACTTAAATCGAATCTATACTCTGCATCAGGGAGATGGCATTATTCTGAAAAGATGAGAGAGGATATGCGAGGGAAAGAGTTCCGGAAACTCCCAAGTCAGAGTTGGATCATTCATGAGAACAAAATTCATTCATTTTATGCCAGAGACAAGTCTCATCCTCAGGTAAAAGACATTTACAGTGGACTAGAGATACTAATCTTAGAATGTTTAAAAGCTGGTTATGTTCCAGACACAAGTTTTGTTCTTCAAGAAGTAGAGGAACGTCAAAAGAAGGAATTCTTGTTCTATCACAGTGGAAAATTAGCTGCAACTTTCGGGATTCTAATGACCAAACCCGGAAAGCCTGTCCAAATTGTGAAGAATGTCCGTTTGTGTGGGGATTGCCATACCTTCTTAAAATATGTTTCTATCATCACCAGAAGGAAAATATTTCTTAGGGATACTTCGGGGTTTCATTGCTTTATAGATGGCCAATGCTCATGTACAGATTACTGGTAA 2634 41.04 MPVNPSPSPPPPLQSKTSLSLCNPKPSHRPFNSTSPTQFLTCPQPVVSISEPLFASRPLISSLSPIASSFDLLRLSTRYGDPDLARAVHARFLKLEEDIYLGNALIAAYLRLGLVRDADKVFSGLSCPNVVSYTALISGFSKSNREDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQIHGIVVKLGFLNCVFICNALMGFYCKCGFLELVLRLFDEMPERDITSWNTVFSSLVKEFKYDEAFDYFRGMQLCKGLGVDHFSLSTLLTACAGSVKSMKGQQLHALALKVGLESHLSVSNSLIGFYTKCGSVNDVMDLFELMPVRDVITWTGMITSYMEFGKLDLAVEVFNKMPERNCISYSAVLAGLSRKGDGSRALELFIEMLEEGLEISDCTLTSIINACGLLKNFKVSQQIQGFIIKFGILSNSCIETALVDMYTRCGRMDDAEKMFHQRSLENDYTAMLTSMICGYARNGQLNEAISLFHSGQSEGAIVMDEVISTSILSLCGSIGFHEMGKQMHCHALKSGLITDTGVGNATISMYSKCWNMDDAVHVFNTMDMQDIVSWNGLVAGHMLHRQGDKVLEIWKKMEKAGIKPDNITFVLIISAYKHTESNLVDSCRSLFVSMETKYNIKPTSEHYASFISVLGRWGLLEEAEETIRKMPFEPDVYVWRALLDSCRVNKNERLEKLAAKYILALEPTDPFTYILKSNLYSASGRWHYSEKMREDMRGKEFRKLPSQSWIIHENKIHSFYARDKSHPQVKDIYSGLEILILECLKAGYVPDTSFVLQEVEERQKKEFLFYHSGKLAATFGILMTKPGKPVQIVKNVRLCGDCHTFLKYVSIITRRKIFLRDTSGFHCFIDGQCSCTDYW 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10922281 10924914 - Lsi01G012680.1 Lsi01g01268 653926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01268 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Lsi01g01268 877 MobiDBLite consensus disorder prediction 1 35 - -
Lsi01g01268 877 Gene3D Tetratricopeptide repeat domain 465 618 IPR011990 GO:0005515
Lsi01g01268 877 Gene3D Tetratricopeptide repeat domain 287 423 IPR011990 GO:0005515
Lsi01g01268 877 Gene3D Tetratricopeptide repeat domain 619 766 IPR011990 GO:0005515
Lsi01g01268 877 PANTHER OS07G0172600 PROTEIN 399 461 - -
Lsi01g01268 877 PANTHER OS07G0172600 PROTEIN 33 398 - -
Lsi01g01268 877 Gene3D Tetratricopeptide repeat domain 189 286 IPR011990 GO:0005515
Lsi01g01268 877 Gene3D Tetratricopeptide repeat domain 61 188 IPR011990 GO:0005515
Lsi01g01268 877 MobiDBLite consensus disorder prediction 15 35 - -
Lsi01g01268 877 Pfam E motif 692 748 IPR046848 -
Lsi01g01268 877 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 471 863 - -
Lsi01g01268 877 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 33 398 - -
Lsi01g01268 877 Pfam E+ motif 754 775 IPR046849 -
Lsi01g01268 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Lsi01g01268 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Lsi01g01268 877 TIGRFAM PPR: pentatricopeptide repeat domain 202 231 IPR002885 -
Lsi01g01268 877 TIGRFAM PPR: pentatricopeptide repeat domain 570 603 IPR002885 -
Lsi01g01268 877 TIGRFAM PPR: pentatricopeptide repeat domain 334 364 IPR002885 -
Lsi01g01268 877 TIGRFAM PPR: pentatricopeptide repeat domain 233 259 IPR002885 -
Lsi01g01268 877 TIGRFAM PPR: pentatricopeptide repeat domain 470 492 IPR002885 -
Lsi01g01268 877 TIGRFAM PPR: pentatricopeptide repeat domain 131 165 IPR002885 -
Lsi01g01268 877 TIGRFAM PPR: pentatricopeptide repeat domain 365 398 IPR002885 -
Lsi01g01268 877 Pfam PPR repeat family 365 409 IPR002885 -
Lsi01g01268 877 Pfam PPR repeat family 568 614 IPR002885 -
Lsi01g01268 877 Pfam PPR repeat family 128 176 IPR002885 -
Lsi01g01268 877 PANTHER OS07G0172600 PROTEIN 471 863 - -
Lsi01g01268 877 Pfam PPR repeat 438 458 IPR002885 -
Lsi01g01268 877 Pfam PPR repeat 645 668 IPR002885 -
Lsi01g01268 877 Pfam PPR repeat 470 493 IPR002885 -
Lsi01g01268 877 Pfam PPR repeat 306 331 IPR002885 -
Lsi01g01268 877 Pfam PPR repeat 103 123 IPR002885 -
Lsi01g01268 877 Pfam PPR repeat 334 364 IPR002885 -
Lsi01g01268 877 Pfam PPR repeat 202 231 IPR002885 -
Lsi01g01268 877 Pfam PPR repeat 233 258 IPR002885 -
Lsi01g01268 877 Pfam PPR repeat 542 565 IPR002885 -
Lsi01g01268 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Lsi01g01268 877 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 399 461 - -
Lsi01g01268 877 Pfam DYW family of nucleic acid deaminases 785 877 IPR032867 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01268 Lsi-Chr1:10922281 Lsi05g01250 Lsi-Chr5:20296971 1.87E-20 dispersed
Lsi01g01268 Lsi-Chr1:10922281 Lsi05g00088 Lsi-Chr5:1603644 1.86E-158 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01268 - - csv:101205681 1566.59