Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01276 ATGGTCCTCGTGTCGTGTGCCACTTCCTTCAATCTCCAAAAAGTGAACAAGAAAGCTCCCACTTTGATCTTCGTCGCTAAGTTTCCCTCTCTTTTCCACACAACAACAACAACCCATTTGCCCACTGACTCCCCCCAAAAAAACCCACAAAAAATGCGCCTCTTTTTTTGCCTCATCTCCGCCTTAGCCTCCGTCGTCGTCGTCGTCACCGGCACGGCGGCTACCTTCCCCAACCACTTGCCTCTCCACAGAGCCTTCCCCCACTTTCCCACTCCCCACTTCCACTCCCTCACAGCTCGCGACCGCCTCCGCCATTCCCGCGTCTTGCGACGACTCGCCGGTGGCATCGTCAATTTCTCCGTTAAAGGCTCCTCCGATCCTTTTGTCGGGCTTTATTTCACCAAAGTGAAGTTGGGAAATCCTCAGAGGGAATTCAATGTGCAGATCGATACTGGGAGTGATATTTTGTGGGTCACTTGCAGTCCTTGCGATGGCTGTCCTCAATCGAGCGGACTTGGAATTGAACTCAACTTATTTGATGCTACAAAGTCATCCTCCGCTAGGGTTGTTCCCTGCACAGATCCAATATGTGCTGCAATTCCGACCACCACAGATCAATGCTTATCCCACACTGACCATTGTGGTTATACCTTCCATTATCGGGATAGAAGTGGGACGTCGGGCTTTTATGTTACTGATTTGATGCATTTTGACATACTTCTAGGGGAGTCAACGATTGCAAATTCTTCAGCCACTATTGTTTTTGGGTGTAGCATATATCAGTATGGGGATTTGACTCAGGCAACCAAAGCACTTGATGGAATTTTTGGGTTTGGTCAAGGGGAGTTCTCAGTAATTTCACAATTATCTTCTCGAGGGATAACACCTAAAGTATTCTCCCATTGTTTGAAAGGAGGGGAAAATGGAGGGGGTATCTTGGTTCTTGGTGAGATTCTGGAGCCCAGCATTGTTTATAGTCCACTTATTCCATCTCAGCCGCACTATACCTTAAATTTACAGAGTATTGCACTCAGCGGGCAACTGTTTCCAAACCCCATGGTGTTTCCGATATCAAATGCAGGAGAAACTATTATCGACTCTGGGACAACTTTGGCATACCTTGTGGAAGAAGTTTACGATTGGATTGTCAGTGTGCTTGTTGCAACTCCAGTTATATCTCTATTTAGGCCATGGTTCCATATAACTTCTGCTGTTTCTCAATCAGCCGCTTCCACAATTTCGAGGGGTAGCCAATGTTATCGAGTCTCTACGAGTATAGCAGAAACATTTCCTGTGGTCAGCTTTAATTTTGAGGGTATTGCAACCATGGTGGTGACGCCTGAAGAATATCTTCAGTTTGACTCCATGGAACCAGCTTTATGGTGCATTGGTTTTCAGAAAGCTGAGGATGGAGTAAACATTTTAGGAGATAAGATCATTGTCTACGACTTAGCTCGACAACGGATTGGATGGGCGAGTTATGACTGTTCGTCGTCTGTAAATGTTTCCGTAACATCCGGGAAGGATGTTTTCATCAATGAAGGACAGCTGAGTCTCCTCAAGAAAGCATCTCTATCAGCTGCTCAACATTGTTATTGTACTACTAATACATTTAAAATTGTTCTGAAGTCCATTTTTGTTAATAACCCTGAGGGTTCTCTTGTCTTCATTATTTCCGCTAGCTGCGTTCTCCTGGCCAATCTGTATTTTGAAAACTTGGTCGGGCTGCTCATCGCCAATATGCGAAGTGCAAATGTTCCTGTGCCTGCATCTTACATCTGGCTTAATGCAGGCTCCTTTTCTGTGAGCTCGTCGTGCAGCTGCGACCCATAA 1833 45.83 MVLVSCATSFNLQKVNKKAPTLIFVAKFPSLFHTTTTTHLPTDSPQKNPQKMRLFFCLISALASVVVVVTGTAATFPNHLPLHRAFPHFPTPHFHSLTARDRLRHSRVLRRLAGGIVNFSVKGSSDPFVGLYFTKVKLGNPQREFNVQIDTGSDILWVTCSPCDGCPQSSGLGIELNLFDATKSSSARVVPCTDPICAAIPTTTDQCLSHTDHCGYTFHYRDRSGTSGFYVTDLMHFDILLGESTIANSSATIVFGCSIYQYGDLTQATKALDGIFGFGQGEFSVISQLSSRGITPKVFSHCLKGGENGGGILVLGEILEPSIVYSPLIPSQPHYTLNLQSIALSGQLFPNPMVFPISNAGETIIDSGTTLAYLVEEVYDWIVSVLVATPVISLFRPWFHITSAVSQSAASTISRGSQCYRVSTSIAETFPVVSFNFEGIATMVVTPEEYLQFDSMEPALWCIGFQKAEDGVNILGDKIIVYDLARQRIGWASYDCSSSVNVSVTSGKDVFINEGQLSLLKKASLSAAQHCYCTTNTFKIVLKSIFVNNPEGSLVFIISASCVLLANLYFENLVGLLIANMRSANVPVPASYIWLNAGSFSVSSSCSCDP 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11023916 11029394 - Lsi01G012760.1 Lsi01g01276 653934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01276 610 Gene3D Acid Proteases 317 504 IPR021109 -
Lsi01g01276 610 PANTHER ASPARTYL PROTEASES 56 515 IPR001461 GO:0004190|GO:0006508
Lsi01g01276 610 Gene3D Acid Proteases 116 316 IPR021109 -
Lsi01g01276 610 SUPERFAMILY Acid proteases 127 500 IPR021109 -
Lsi01g01276 610 Pfam Xylanase inhibitor C-terminal 334 492 IPR032799 -
Lsi01g01276 610 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 56 515 - -
Lsi01g01276 610 Pfam Xylanase inhibitor N-terminal 132 316 IPR032861 -
Lsi01g01276 610 PRINTS Pepsin (A1) aspartic protease family signature 363 374 IPR001461 GO:0004190|GO:0006508
Lsi01g01276 610 PRINTS Pepsin (A1) aspartic protease family signature 138 158 IPR001461 GO:0004190|GO:0006508
Lsi01g01276 610 ProSiteProfiles Peptidase family A1 domain profile. 132 492 IPR033121 -
Lsi01g01276 610 CDD pepsin_A_like_plant 132 496 IPR034161 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01276 Lsi03g01959 CCT
Lsi01g01276 Lsi03g01959 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01276 Lsi-Chr1:11023916 Lsi11g00964 Lsi-Chr11:15057562 3.33E-83 dispersed
Lsi08g00444 Lsi-Chr8:12076789 Lsi01g01276 Lsi-Chr1:11023916 1.02E-25 dispersed
Lsi01g01276 Lsi-Chr1:11023916 Lsi10g01210 Lsi-Chr10:16379342 5.28E-164 wgd
Lsi01g01276 Lsi-Chr1:11023916 Lsi03g01959 Lsi-Chr3:31009007 1.85E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01276 - - csv:101205203 776.548