Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01277 ATGGCTTCCACTCTCTGTTTTCCCTCTATCACTTTCCCCTCTGCTCCCCTCCACAAACGAATCCCTCTCAGACGAAGAACCCTATCTCCATATCTCTCCATTAAATCCTCCATTGACGAAGGACGAAATCCCTCAACGCCCACAAAGCTTAAGAACTCCACCAACACTGCAAAATCCGGTTCCTGGGTCAGCCCTGATTGGCTCACCTCTCTCACTCGCTACATTACTCTAGGGCAGGGCGACGACTCCGGCATCCCCATTGCAACTGCCAAGCTCGATGACGTTTCTGATCTTCTTGGCGGTGCCCTTTTCCTTCCACTCTTCAAGTGGATGAATGACTATGGACCCATTTACAGGCTCGCTGCTGGCCCTAGAAATTTCGTCGTCGTTAGTGATCCCGCCATTGCTAAGCACGTTCTCAGGAATTATGGGACTTACGCTAAAGGCCTTGTTTCTGAGGTTTCCGAGTTCTTGTTTGGGTCGGGTTTCGCCATTGCAGAAGGCCCTCTCTGGATGGTTCGCCGTAGGGCTGTGGTTCCATCTCTTCACAAGAAGTACTTATCGGTTATTGTTGATCGAGTATTTTGTAAATGTGCCATGAGATTGGTGGAGAAGCTGGAAAAGGATGCATTAAATAATAATTCGGTTAACATGGAGGAAAAGTTTTCTCAACTAACTCTTGATGTTATTGGTCTATCTGTATTCAACTACAGTTTTGATTCTCTCTCTGCTGACAGCCCTATTAAGGCTCTGTGTAAGATAATCCCAAGACAGATAAAAGCTGAAGAAGCAGTTACAGTGATCAGGAGAACTGTTGAAGAACTCATTGCCAAGTGCAAAGAAATTGTTGAAACTGAGGGTGAGCGTATTGATGAGGAGGAATATGTGAACGATGCTGATCCAAGCATCCTCCGATTTCTGCTGGCCAGTAGAGAAGAGGTCTCAAGTGTACAATTACGAGATGATCTATTGTCCATGTTGGTTGCTGGACATGAAACTACTGGCTCTGTTCTGACTTGGACACTGTATCTTTTAAGTAAGCATTCCTCATCATTGGTCAAGGCACAAAATGAAGTTGATAGAGTCTTACAAGGAAGGCCTCCTTCTTATGAAGATACGAAGGAACTTAAATATTTGACACGTTGTATCCTTGAGTCAATGCGTCTTTACCCACATCCACCTGTTTTGATAAGAAGAGCTCAAGTGGCTGACGTACTCCCTGGAAATTACAAGGTTAACGCTGGTCAAGATATCATGATTTCAGTATATAACATCCATCGCTCTTCCCAGGTCTGGGAACAAGCAGAAGAGTTTATACCAGAAAGATTTGACTTGGAAGGCCCTGTGCCTAATGAAAGCAATACAGATTTCAGATTTATTCCGTTCAGCGGTGGGCCTCGAAAGTGTGTTGGTGATCAATTTGCCCTGCTTGAAGCTATTGTTGCACTTGCCATATTTCTACAGCATATGAATTTCGAGCTGGTTCCGAATCAGACCATTGGGATGACTACTGGAGCAACTATACATACAACAAATGGTTTGTACATGAAACTCAGCCAAAGGAAGCTGACCCCAGAATTAGTTTCCCCTGCTTCTTCAAGGTCAGGTGTGAGGTGGGAGATTGAAAGGGCAACTAACATCCTTTGGCATATTCTTTTCCTAGACTTTCCTCTTAATCTCTCTATGCACTTTTCTGGTGGATCTTGGGATTCAGGAATCTTTGAACAGGGCAAGTCAGATTATGTCCTCCACCCTCGTTTTCCTCTTTCTTTTTAA 1776 44.43 MASTLCFPSITFPSAPLHKRIPLRRRTLSPYLSIKSSIDEGRNPSTPTKLKNSTNTAKSGSWVSPDWLTSLTRYITLGQGDDSGIPIATAKLDDVSDLLGGALFLPLFKWMNDYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTYAKGLVSEVSEFLFGSGFAIAEGPLWMVRRRAVVPSLHKKYLSVIVDRVFCKCAMRLVEKLEKDALNNNSVNMEEKFSQLTLDVIGLSVFNYSFDSLSADSPIKALCKIIPRQIKAEEAVTVIRRTVEELIAKCKEIVETEGERIDEEEYVNDADPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKHSSSLVKAQNEVDRVLQGRPPSYEDTKELKYLTRCILESMRLYPHPPVLIRRAQVADVLPGNYKVNAGQDIMISVYNIHRSSQVWEQAEEFIPERFDLEGPVPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAIFLQHMNFELVPNQTIGMTTGATIHTTNGLYMKLSQRKLTPELVSPASSRSGVRWEIERATNILWHILFLDFPLNLSMHFSGGSWDSGIFEQGKSDYVLHPRFPLSF 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11033086 11040625 + Lsi01G012770.1 Lsi01g01277 653935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01277 591 Gene3D Cytochrome P450 86 535 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01277 591 PRINTS P450 superfamily signature 329 346 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01277 591 PRINTS P450 superfamily signature 469 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01277 591 PRINTS P450 superfamily signature 381 392 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01277 591 PRINTS P450 superfamily signature 460 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01277 591 MobiDBLite consensus disorder prediction 39 58 - -
Lsi01g01277 591 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 462 471 IPR017972 GO:0005506|GO:0016705
Lsi01g01277 591 Pfam Cytochrome P450 107 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01277 591 PRINTS E-class P450 group I signature 111 130 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01277 591 PRINTS E-class P450 group I signature 318 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01277 591 PRINTS E-class P450 group I signature 469 492 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01277 591 PRINTS E-class P450 group I signature 421 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01277 591 PRINTS E-class P450 group I signature 338 364 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01277 591 PRINTS E-class P450 group I signature 459 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g01277 591 PANTHER CYTOCHROME P450 FAMILY 4 123 521 - -
Lsi01g01277 591 PANTHER CAROTENE EPSILON-MONOOXYGENASE, CHLOROPLASTIC 123 521 - -
Lsi01g01277 591 SUPERFAMILY Cytochrome P450 100 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01277 Lsi-Chr1:11033086 Lsi05g00806 Lsi-Chr5:11988067 3.49E-121 dispersed
Lsi01g01277 Lsi-Chr1:11033086 Lsi11g00296 Lsi-Chr11:3063954 6.04E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01277 K09837 - csv:101204961 983.015