Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01287 ATGCCAATGACCAAGCCATTATCATTGTCAATTGGCCTATGGGCATCTTTGCTAATCGTATTGTTGCTTATAATTGCTCAGGCAAATGTAGTAGCTTCATTGAGACGTCTCCCACCTTATGCAAAAGCGCGCAGGCAATTAGGAGGCGCGCAGTTTATTAAAAAGCATCACAGGCCGCCCTTTAAGCCTGGCCCTTGGAAGCACGCTCATGCTACCTTCTATGAAGGTGGCTCCGGAACCTTCGGTGGTGCATGTGGGTACGATGACGTGGAAAAGGAAGGGTATGGGATGCAGACGGCGGCGCTGAGTATGGCGCTGTTCAACAATGGGCAGAGCTGCGGCGCTTGCTTTGAAATAAAATGCGTGGAGGATCCGCAGTGGTGCAAGCCCGGGCAGCCGTCCCTGATGGTAACGGGCACCAACCACTGCCCGCCAAACTACAACCTTCCTAGTGACAATGGCGGATGGTGCAATCCCCCCCTCGAGCATTTCGATATAGCCAAGCCTGTTTTCCTCAACATTGCTGAATTCAAGGCTGGCATTGTTCCTATCAATTACCGCAGGGTTCCATGCAAAAAGCAAGGAGGGATTAGATTCACAATAACTGGAAATCCATATTTCAACCAAGTGTTAGTGTGGAACGTGGGAGGAGCTGGAGATTTGACAAGTGTCCAAGTGAAGGGTCATCGTAAGCTGAAATGGACAGCCATGTCTCGTTTGTGGGGTCAAAAATGGACCACCAACGCCATGATGGTTGGCGAGTCCCTCACCTTCAGGGTTCGAACCAGTGATGGCAGATTCTCTACTTCATGGCACATTGCTCCCGCCAATTGGCAGTTTGGTCAGACCTTCGAAGGCAAAAACTTTAAGTAG 873 50.29 MPMTKPLSLSIGLWASLLIVLLLIIAQANVVASLRRLPPYAKARRQLGGAQFIKKHHRPPFKPGPWKHAHATFYEGGSGTFGGACGYDDVEKEGYGMQTAALSMALFNNGQSCGACFEIKCVEDPQWCKPGQPSLMVTGTNHCPPNYNLPSDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPINYRRVPCKKQGGIRFTITGNPYFNQVLVWNVGGAGDLTSVQVKGHRKLKWTAMSRLWGQKWTTNAMMVGESLTFRVRTSDGRFSTSWHIAPANWQFGQTFEGKNFK 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11126023 11128377 - Lsi01G012870.1 Lsi01g01287 653945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01287 290 PRINTS Expansin signature 243 264 IPR002963 GO:0009664
Lsi01g01287 290 PRINTS Expansin signature 154 171 IPR002963 GO:0009664
Lsi01g01287 290 PRINTS Expansin signature 94 108 IPR002963 GO:0009664
Lsi01g01287 290 PRINTS Expansin signature 195 207 IPR002963 GO:0009664
Lsi01g01287 290 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Lsi01g01287 290 PRINTS Expansin signature 121 132 IPR002963 GO:0009664
Lsi01g01287 290 PRINTS Expansin signature 272 288 IPR002963 GO:0009664
Lsi01g01287 290 PRINTS Expansin signature 171 184 IPR002963 GO:0009664
Lsi01g01287 290 PRINTS Expansin signature 135 145 IPR002963 GO:0009664
Lsi01g01287 290 SUPERFAMILY Barwin-like endoglucanases 65 214 IPR036908 -
Lsi01g01287 290 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 82 196 IPR007112 -
Lsi01g01287 290 Gene3D - 51 192 IPR036908 -
Lsi01g01287 290 PRINTS Expansin/Lol pI family signature 179 195 IPR007118 GO:0005576
Lsi01g01287 290 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Lsi01g01287 290 PRINTS Expansin/Lol pI family signature 65 80 IPR007118 GO:0005576
Lsi01g01287 290 PRINTS Expansin/Lol pI family signature 103 121 IPR007118 GO:0005576
Lsi01g01287 290 PRINTS Expansin/Lol pI family signature 272 286 IPR007118 GO:0005576
Lsi01g01287 290 Gene3D - 195 289 IPR036749 -
Lsi01g01287 290 Pfam Expansin C-terminal domain 197 275 IPR007117 -
Lsi01g01287 290 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 206 286 IPR007117 -
Lsi01g01287 290 Pfam Lytic transglycolase 99 186 IPR009009 -
Lsi01g01287 290 SUPERFAMILY PHL pollen allergen 193 286 IPR036749 -
Lsi01g01287 290 PANTHER EXPANSIN-A15 19 290 IPR002963 GO:0009664
Lsi01g01287 290 PANTHER EXPANSIN-A32 19 290 - -
Lsi01g01287 290 SMART dpbb_1 99 186 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01287 Lsi-Chr1:11126023 Lsi02g01353 Lsi-Chr2:18139244 2.39E-111 dispersed
Lsi01g01287 Lsi-Chr1:11126023 Lsi10g01386 Lsi-Chr10:17970338 6.94E-115 transposed
Lsi01g01287 Lsi-Chr1:11126023 Lsi04g00889 Lsi-Chr4:8841940 1.40E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01287 - - csv:101204720 494.967