Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01292 ATGCCGATCCGTAACATTGCAATTGGAAGGCCCGAAGAGGCTACTCATCCAGATGCTTTGAAGGCTGGGTTGGCTGAGTTCATTTCCACGTTGATTTTTGTCTTTGCTGGCCAAGGTTCCGGCATCGCCTTCAGTAAGCTTACCGAAGGCGGCGCCACCACTCCTGCCGGTCTCATCTCCGCATCCATCGCCCATGCCTTTGCCCTTTTTGTTGCCGTCTCCGTCGGTGCCAACATCTCTGGTGGCCATGTCAACCCCGCCGTTACCTTCGGTGCCTTCGTTGGCGGTAACATCACCCTCTTACGTGGCATCATCTACTGGATTGCCCAACTCCTCGGATCCGTCGTCGCATGCTTGCTCCTTAAATTCGTCACCGGCTTGTTATTAACCGATGTTGAGGGTTTTGTTCCTCCCACCGGAAGCTTCGCTCTATCAGCTGGAGTTGGTGAAATAAACGCCTTCGTTTTCGAGATCGTGATGACATTCGGATTGGTGTACACAGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACTATTGCACCCATCGCAATCGGTTTCATCGTCGGAGCTAACATTTTGGCCGGAGGAGCATTCACCGGAGCATCCATGAACCCAGCCGTGGCCTTCGGTCCATCAGTAGTGAGCTGGTCATGGAGCAGCCACTGGGTCTACTGGGCCGGGCCTCTGATCGGAGGTGGGCTTGCTGGACTCATCTACGAGTTCATCTTCATTTCCAGCACCCACGAGCAGCTCCCAACCACCGACTACTAA 783 54.53 MPIRNIAIGRPEEATHPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTEGGATTPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVVACLLLKFVTGLLLTDVEGFVPPTGSFALSAGVGEINAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWSSHWVYWAGPLIGGGLAGLIYEFIFISSTHEQLPTTDY 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11208708 11210685 + Lsi01G012920.1 Lsi01g01292 653950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01292 260 Pfam Major intrinsic protein 14 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01292 260 PANTHER AQUAPORIN-8 1 260 IPR034294 -
Lsi01g01292 260 TIGRFAM MIP: MIP family channel proteins 25 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01292 260 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Lsi01g01292 260 CDD MIP 21 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01292 260 PRINTS Major intrinsic protein family signature 156 174 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01292 260 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01292 260 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01292 260 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01292 260 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01292 260 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g01292 260 PANTHER AQUAPORIN TIP1-1 1 260 - -
Lsi01g01292 260 Gene3D Glycerol uptake facilitator protein. 4 260 IPR023271 -
Lsi01g01292 260 SUPERFAMILY Aquaporin-like 13 255 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01292 Lsi03g01989 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01292 Lsi-Chr1:11208708 Lsi02g00286 Lsi-Chr2:2454034 2.58E-100 dispersed
Lsi02g01671 Lsi-Chr2:22504748 Lsi01g01292 Lsi-Chr1:11208708 2.42E-89 transposed
Lsi01g01292 Lsi-Chr1:11208708 Lsi03g01989 Lsi-Chr3:31267990 9.51E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01292 K09873 - csv:101204225 449.899