Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01296 ATGAGAGGCACAAGATTCAGCATCAGAACTGGGCGAAGAAGAATGTCACAGATGACGAATTTCGCCTTCCAAGTTCTATTCGGCCGATGGTTCACCGTCTTCGCTTCTTTACTCATCATGTCCGTTTCCGGCGCCACTTACATGTTCGCACTCTACTCCGCCGACATCAAATCCTCCTTCAATTACGATCAGACCACTCTCAACCTCATCGGCTTCTTTAAGGATCTGGGTTCCAACGTCGGAGTCTTTTCCGGCCTCATCAATGAAATTACTCCACCTTGGGTCGTCCTCTTCATCGGTGGGGTAATGAATTTCTTTGGCTATTTCATGATTTGGCTTTCTGTCACTCACCGAATCCCCAAACCCAAACTGCCCGCCATGTGTTTGCTTATATGTCTAGGTGCCAATTCTCAGACATTTTCTAATACAGGGGCTTTGATCCCTTCTGTGAGGAATTTTCCCCAGAATCGTGGTAATGTATTGGGTTTATTGAAAGGGTTTGTTGGGTTAAGTGGGGCAATTTTGACTCAGATTTACCATGCTTTTTATGGGGATGATTCTAAGGATTTTATCTTGCTTATTGCTTGGTTGCCTACTGCTGTTTCTTTCCTGCTTCTTCGGATTGTTAGAGTAGTGGAAGTGAACCCAATATTCAAATCCAATGATCTCAAAAATTTCTATTCTATGCTCTACATTTCCCTTGGTCTTGCTGGCTTCCTCATGATTTTGATTATTATTCAAAATGAACTCATGTTTACTAGAATTCAGTATTTGGGTTGTGCGTTTGTTCTCCTAGCGTTTCTTTTTCTTCCCATTGTCGTTGTTATAAGAGAAGAATTCAGCATTAGGAAGAGGAAATTGCAAGGTGTGGATGTAACTTCTTGGCTTCCAATTCCACCAGACCCATCTCGAGCTGAATTACCATCGCCTAGAACTTCAAGTGTGCCGACAACTGCCATAGCTTTAGCCAACCCAAGTTCTTGCTTTGAAAACGTGTTCAGACCGCCGGAAAGAGGAGAGGACTACACCATTTTACAAGCAACCTTCAGTGTAGATATGTTGATTCTGTTTGTTGTCACAATTTGTGGGGCTGGTGGGACTTTGACTGCAATGGACAACTTGGGTCAGATAGGCAGCTCCCTTGGCTACTCAACTCATACCATTTCTACTTTCACTTCTCTAGTGAGTATATGGGGTTTTCTCGGTCGAGCATTTTCGGGTTATGCTTCTGAATTCTTATGGACAAAGTATAACTTCTCTCGCCCTTTGTTCCTCACTCTTGTGCTTCTTCTCTCTTGCGTTGGTCATCTTCTAATTGCCTTTGGAGTCCCAACCTCCCTTTATTTTGCTTCAGTGATCATTGGATTTTGCTTTGGAGCACTATGGCCATTGATTTTCGCCATTGTTTCTGAATTATTTGGCTTGAAATACTATGCAACTTTATATAGCATAAGCGGCATTGCTAGCCCAGTTGGCTCATACATTTTCAATGTGAAAGTAGCTGGCTATTTATACGACCAAGAGGCTAGAAAGCAAATGGCAGCCATTGGTCTTAGAAGTGTAGCTGGTGGAGACTTAGACTGCAAGGGTGTCCATTGTTACAGGGTGATATCTATAAGAAGTTTAGAGAGGAAAGAAAGGAAGCAGAATGATCGAGTTAGTATTCCTGCTATAGGCTTACTTCTTTTGGCACTCTACAATGCCAGTTTGTGTAACACTGTTTGTTTCAACACGCTTCAGGACCTCGTTATTTTCCTTCTGTTCCGACATCTGAGAAAGAAGCGATTTCAGGATTGTGAAAAGATTGAAAGTTGTTCTAGTGTTACGATCAGGAGTGGTGAATTGCCATTTTGCTCAGAAACCACAACCTATGGAGTAGTTGTCCAGTGTTTACTTTTGTTCAATGTGGAGATTGCTTACCTTAGTTCTATCAGAAGCTTTCCTCTTTTGCTTATCAGTTAG 1962 42.3 MRGTRFSIRTGRRRMSQMTNFAFQVLFGRWFTVFASLLIMSVSGATYMFALYSADIKSSFNYDQTTLNLIGFFKDLGSNVGVFSGLINEITPPWVVLFIGGVMNFFGYFMIWLSVTHRIPKPKLPAMCLLICLGANSQTFSNTGALIPSVRNFPQNRGNVLGLLKGFVGLSGAILTQIYHAFYGDDSKDFILLIAWLPTAVSFLLLRIVRVVEVNPIFKSNDLKNFYSMLYISLGLAGFLMILIIIQNELMFTRIQYLGCAFVLLAFLFLPIVVVIREEFSIRKRKLQGVDVTSWLPIPPDPSRAELPSPRTSSVPTTAIALANPSSCFENVFRPPERGEDYTILQATFSVDMLILFVVTICGAGGTLTAMDNLGQIGSSLGYSTHTISTFTSLVSIWGFLGRAFSGYASEFLWTKYNFSRPLFLTLVLLLSCVGHLLIAFGVPTSLYFASVIIGFCFGALWPLIFAIVSELFGLKYYATLYSISGIASPVGSYIFNVKVAGYLYDQEARKQMAAIGLRSVAGGDLDCKGVHCYRVISIRSLERKERKQNDRVSIPAIGLLLLALYNASLCNTVCFNTLQDLVIFLLFRHLRKKRFQDCEKIESCSSVTIRSGELPFCSETTTYGVVVQCLLLFNVEIAYLSSIRSFPLLLIS 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11237794 11240121 + Lsi01G012960.1 Lsi01g01296 653954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01296 653 Pfam Nodulin-like 29 276 IPR010658 -
Lsi01g01296 653 Gene3D MFS general substrate transporter like domains 328 522 IPR036259 -
Lsi01g01296 653 CDD MFS_Mch1p_like 28 536 - -
Lsi01g01296 653 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 11 537 - -
Lsi01g01296 653 SUPERFAMILY MFS general substrate transporter 30 507 IPR036259 -
Lsi01g01296 653 PANTHER MFS TRANSPORTER 11 537 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01296 Lsi-Chr1:11237794 Lsi03g01999 Lsi-Chr3:31359044 0 dispersed
Lsi01g01296 Lsi-Chr1:11237794 Lsi03g01994 Lsi-Chr3:31328766 0 wgd
Lsi01g01296 Lsi-Chr1:11237794 Lsi08g00691 Lsi-Chr8:15212551 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01296 - - csv:101203981 956.822