Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi01g01298 | ATGCTGGCCACAACCTGCATTGTGCTTCTAGCTTTGCTGCTACCCTCCAGCTTGCCGCTCCGCACTGGTGCCGGTGCCGCTGCAGCTGCAGCTCTCAACCTCACTCTCCCCGGCCAGCATCCGAGCCCTGAACTGGTTGCTGAAGAAGTTCACAGGAAAGTGAATGCTTCCTTAACGAGAAGGCAATTGCTCCAAATATCAGAGAAAGATGGATCTTCTTCTTGCTACACCGGGAACCCCATCGACGACTGCTGGAAATGCGATCCAAATTGGCCAAACAACCGCCAGCGCCTCGCCGATTGCGCCATAGGATTCGGCCAGTACGCTCTCGGCGGCAAGAACGGCGAGTTCTACATCGTCACAGACGATTCCGACGACGATGCGGTAAATCCAAAGCCCGGAACATTACGATACGCCGTGATACAGCCGCAACCTCTCTGGATCGTCTTCCCCACCAACATGCTCATCAAACTCTCACAGGAACTCATCTTCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAATGTCCACATCGTCGGCGGTGGCTGCATTACGTTACAGTACATAAGCAATGTCATCATCCACAACATCCACATCCACCATTGTTATCCATCAGGTAACACCATGGTCCGATCAAGTCCGACGCATTACGGGTACCGGACGAAATCTGACGGCGACGGGATATCGATCTTCGGATCGAAAGACATATGGATTGATCATTGTTCATTGTCGCATTGCAAAGATGGGCTGATCGATGCGGTGATGGGATCCACCGGAATCACGATTTCAAACAATTATTTCTCACATCACGATGAAGTTATGCTGTTGGGTCACAGCGATCACTACTTGCCGGATTCCGGAATGCAGGTCAATTCTCCATCCCTTTTCCTTGCTTCTCTCCCCAAATTAATTAATTAG | 921 | 51.47 | MLATTCIVLLALLLPSSLPLRTGAGAAAAAALNLTLPGQHPSPELVAEEVHRKVNASLTRRQLLQISEKDGSSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDAVNPKPGTLRYAVIQPQPLWIVFPTNMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDHYLPDSGMQVNSPSLFLASLPKLIN | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 11251835 | 11256009 | - | Lsi01G012980.1 | Lsi01g01298 | 653956 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi01g01298 | 306 | PANTHER | PECTATE LYASE 12-RELATED | 27 | 292 | - | - | |
| Lsi01g01298 | 306 | Gene3D | - | 78 | 293 | IPR012334 | - | |
| Lsi01g01298 | 306 | Pfam | Pectate lyase | 163 | 282 | IPR002022 | - | |
| Lsi01g01298 | 306 | SMART | amb_all | 153 | 303 | IPR002022 | - | |
| Lsi01g01298 | 306 | SUPERFAMILY | Pectin lyase-like | 73 | 291 | IPR011050 | - | |
| Lsi01g01298 | 306 | PANTHER | PECTATE LYASE 18-RELATED | 27 | 292 | IPR045032 | GO:0030570 | |
| Lsi01g01298 | 306 | PRINTS | Pollen allergen Amb family signature | 101 | 118 | IPR018082 | - | |
| Lsi01g01298 | 306 | PRINTS | Pollen allergen Amb family signature | 125 | 150 | IPR018082 | - | |
| Lsi01g01298 | 306 | PRINTS | Pollen allergen Amb family signature | 161 | 177 | IPR018082 | - | |
| Lsi01g01298 | 306 | PRINTS | Pollen allergen Amb family signature | 225 | 246 | IPR018082 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g01298 | Lsi-Chr1:11251835 | Lsi02g00456 | Lsi-Chr2:3822873 | 1.57E-124 | dispersed | |
| Lsi01g01298 | Lsi-Chr1:11251835 | Lsi04g00102 | Lsi-Chr4:1154248 | 5.04E-144 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi01g01298 | K01728 | - | csv:101203012 | 554.288 |