Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01298 ATGCTGGCCACAACCTGCATTGTGCTTCTAGCTTTGCTGCTACCCTCCAGCTTGCCGCTCCGCACTGGTGCCGGTGCCGCTGCAGCTGCAGCTCTCAACCTCACTCTCCCCGGCCAGCATCCGAGCCCTGAACTGGTTGCTGAAGAAGTTCACAGGAAAGTGAATGCTTCCTTAACGAGAAGGCAATTGCTCCAAATATCAGAGAAAGATGGATCTTCTTCTTGCTACACCGGGAACCCCATCGACGACTGCTGGAAATGCGATCCAAATTGGCCAAACAACCGCCAGCGCCTCGCCGATTGCGCCATAGGATTCGGCCAGTACGCTCTCGGCGGCAAGAACGGCGAGTTCTACATCGTCACAGACGATTCCGACGACGATGCGGTAAATCCAAAGCCCGGAACATTACGATACGCCGTGATACAGCCGCAACCTCTCTGGATCGTCTTCCCCACCAACATGCTCATCAAACTCTCACAGGAACTCATCTTCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAATGTCCACATCGTCGGCGGTGGCTGCATTACGTTACAGTACATAAGCAATGTCATCATCCACAACATCCACATCCACCATTGTTATCCATCAGGTAACACCATGGTCCGATCAAGTCCGACGCATTACGGGTACCGGACGAAATCTGACGGCGACGGGATATCGATCTTCGGATCGAAAGACATATGGATTGATCATTGTTCATTGTCGCATTGCAAAGATGGGCTGATCGATGCGGTGATGGGATCCACCGGAATCACGATTTCAAACAATTATTTCTCACATCACGATGAAGTTATGCTGTTGGGTCACAGCGATCACTACTTGCCGGATTCCGGAATGCAGGTCAATTCTCCATCCCTTTTCCTTGCTTCTCTCCCCAAATTAATTAATTAG 921 51.47 MLATTCIVLLALLLPSSLPLRTGAGAAAAAALNLTLPGQHPSPELVAEEVHRKVNASLTRRQLLQISEKDGSSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDAVNPKPGTLRYAVIQPQPLWIVFPTNMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDHYLPDSGMQVNSPSLFLASLPKLIN 306
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 11251835 11256009 - Lsi01G012980.1 Lsi01g01298 653956
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01298 306 PANTHER PECTATE LYASE 12-RELATED 27 292 - -
Lsi01g01298 306 Gene3D - 78 293 IPR012334 -
Lsi01g01298 306 Pfam Pectate lyase 163 282 IPR002022 -
Lsi01g01298 306 SMART amb_all 153 303 IPR002022 -
Lsi01g01298 306 SUPERFAMILY Pectin lyase-like 73 291 IPR011050 -
Lsi01g01298 306 PANTHER PECTATE LYASE 18-RELATED 27 292 IPR045032 GO:0030570
Lsi01g01298 306 PRINTS Pollen allergen Amb family signature 101 118 IPR018082 -
Lsi01g01298 306 PRINTS Pollen allergen Amb family signature 125 150 IPR018082 -
Lsi01g01298 306 PRINTS Pollen allergen Amb family signature 161 177 IPR018082 -
Lsi01g01298 306 PRINTS Pollen allergen Amb family signature 225 246 IPR018082 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01298 Lsi-Chr1:11251835 Lsi02g00456 Lsi-Chr2:3822873 1.57E-124 dispersed
Lsi01g01298 Lsi-Chr1:11251835 Lsi04g00102 Lsi-Chr4:1154248 5.04E-144 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01298 K01728 - csv:101203012 554.288