Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01300 ATGGGAGGAAAGTGCCCTCACAGAAGCGTAAAGAAGCGGAGATACTCGCACAAGACCGCTCGGCGAACGAAATTTCTTGTCAAAGGTGATGATATGGTTTACGATGAGTTAACAAAACCAGATGTGGAGAGACCTCTTCCTGTCGATGAAGATTTGCCTGGAATGGGGCAGTATTACTGCTTGCACTGCGACCGATACTTTGCGAATGTGTCTGTGAGGGATGAGCATTTCAAGACCAAGCGTCACAGGAAGCGGGTAAAACTAATGACGGGTCCTGCACCACACACGCAATTGGACGCCGACCTAGCTGCTGGGATGGGCATGCCTGATAACGGTCCAAAGCTTATGGCAATCTCGGAGATGGGTTCGCCGCCGTATGCGGCGGTGGAGAAGCTTGGGATAAATTAG 408 50.98 MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERPLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAISEMGSPPYAAVEKLGIN 135
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 11288920 11294618 + Lsi01G013000.1 Lsi01g01300 653958
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01300 135 PANTHER BNAA03G16890D PROTEIN 3 117 - -
Lsi01g01300 135 Gene3D Classic Zinc Finger 45 108 - -
Lsi01g01300 135 PANTHER EXPRESSED PROTEIN 3 117 - -
Lsi01g01300 135 SUPERFAMILY beta-beta-alpha zinc fingers 45 109 IPR036236 -
Lsi01g01300 135 ProSitePatterns Zinc finger C2H2 type domain signature. 60 82 IPR013087 -
Lsi01g01300 135 Pfam Zinc-finger double-stranded RNA-binding 57 83 IPR022755 -
Lsi01g01300 135 SMART ZnF_U1_5 55 89 IPR003604 GO:0003676|GO:0008270
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01300 K14821 - csv:101222807 235.728