Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi01g01300 | ATGGGAGGAAAGTGCCCTCACAGAAGCGTAAAGAAGCGGAGATACTCGCACAAGACCGCTCGGCGAACGAAATTTCTTGTCAAAGGTGATGATATGGTTTACGATGAGTTAACAAAACCAGATGTGGAGAGACCTCTTCCTGTCGATGAAGATTTGCCTGGAATGGGGCAGTATTACTGCTTGCACTGCGACCGATACTTTGCGAATGTGTCTGTGAGGGATGAGCATTTCAAGACCAAGCGTCACAGGAAGCGGGTAAAACTAATGACGGGTCCTGCACCACACACGCAATTGGACGCCGACCTAGCTGCTGGGATGGGCATGCCTGATAACGGTCCAAAGCTTATGGCAATCTCGGAGATGGGTTCGCCGCCGTATGCGGCGGTGGAGAAGCTTGGGATAAATTAG | 408 | 50.98 | MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELTKPDVERPLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDADLAAGMGMPDNGPKLMAISEMGSPPYAAVEKLGIN | 135 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 11288920 | 11294618 | + | Lsi01G013000.1 | Lsi01g01300 | 653958 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi01g01300 | 135 | PANTHER | BNAA03G16890D PROTEIN | 3 | 117 | - | - | |
| Lsi01g01300 | 135 | Gene3D | Classic Zinc Finger | 45 | 108 | - | - | |
| Lsi01g01300 | 135 | PANTHER | EXPRESSED PROTEIN | 3 | 117 | - | - | |
| Lsi01g01300 | 135 | SUPERFAMILY | beta-beta-alpha zinc fingers | 45 | 109 | IPR036236 | - | |
| Lsi01g01300 | 135 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 60 | 82 | IPR013087 | - | |
| Lsi01g01300 | 135 | Pfam | Zinc-finger double-stranded RNA-binding | 57 | 83 | IPR022755 | - | |
| Lsi01g01300 | 135 | SMART | ZnF_U1_5 | 55 | 89 | IPR003604 | GO:0003676|GO:0008270 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi01g01300 | K14821 | - | csv:101222807 | 235.728 |