Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01326 ATGGCCCTAGTCAAGACCATTTGCAAGAGCTCCATTCATGACCCACTCAATTGGGGTATGGCCGCCGAGTCCCTCAAAGGAAGCCATCTTGATGAGGTCAAGCGCATGGTGGAGGAGTATCGGAAACCCTGTGTCAAGCTTGATGGTGAGACACTCACCATTTCCCAAGTTGCTGCTATTGCTATTAGAGACTCTGATGTTATTGTTGAGCTTTCGGAGTCTACTAAAGCTGGTGTTAAAGCTAGTAGTGATTGGATTATGGAAAGTATAAACAAGGGAACTGATAGTTATGGTATCACTACTGGATTTGGTGCTACGTCCCATAGAAGAACCAAACAAGGTGCGACTCTTCAAAATGAGCTTGTTAGATTTTTAAATGCTGGAATTTTTGGAAGTGGAACTGAGTCGAGTCATATTTTGCCCCACTCGGCTACAAGGGCAGCCATGTTGGTGAGAACCAATACTCTTCTTCAAGGCTACTCGGGAATTAGATTTGAGATTTTGGAAGCCATAACAAAACTCTTAAATCATAACGTCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCCTCTGGAGATCTTGTTCCTCTTTCTTACATTGTTGGATTACTCACTGGTCGACCGAACTCTAAAGCTATTGGTCCAAATGGAGAAAATCTTGATGCAAAGGAGGCTTTCATACAAGCTGGTATTACTTCTGGGTTCTTTGAGTTGCGTCCTAAAGAAGGTTTTGCTCTTGTCAATAGCACTGCTGTTGGTTCTGGATTGGCTTCTATTATTCTCTTTGATGCAAATATTTTGGTTGTTTTGTTCGAGATTTTGTCAGCCATTTTTGCTGAAGTTATGCAAGGCAAGCTTGAATTTACTGACTATTTGACTCATAAGTTGAAGCATCATCCTGGTCAAATTGAGGCCGTTGCAATTATGGAACACGTTTTGGATGGGAGTTCTTATATGAAAACTGCCAAGCAATTGCATGAGATGGATCCTCTTCAAAAGCCAAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTTCACTGATTGAAGTTATTCGATTCTCAACGAAGTCCATTGAGCGAGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTTCAAGGAACTCCAGTCGGAGTTTCTATGGACAATACTCGTCTTGCTATTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAACTCGTCAATGATTTCTACAACAACGGTTTGCCTTCTAATCTTTCTGCAGGTAGAAACCCAAGTTTGGATTATGGGTTTAAAGGTGCTGAAATCGCTATGGCTTCATACTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACTAGTCATGTTCAGAGTGCTGAGCAACACAACCAAGATATTAACTCTCTTGGTTTAATTTCCTCAAGGAAAACAGCTGAAGTCATTGACATTCTAAAACTCATGTCTTCTACCTTTTTAGTTGCTCTGTGCCAAGCAATTGACTTAAGGCATTTGGAGGAAAACTTGAAGAGCGCGGTTAAAAGCACTATAAGCCTAGTAGCACAGAAGGTGTTGATCTCATCCTCTAATGGTGCACTTGATCCCTCAAGATTGTTCGAGAAAGACTTATTAAAGGTGGTCGATAGAGAGTGCACTTTTTCTTATATAGATGACCCATGTAGTGTTACTTATCCATTGATGCAGAAATTGAGACAAGTTTTCGTTGAACACGCACTTGCAACTGGTGATGATGGAAACAATGTAAACACTTCAATCTTCCAAAAGATTGCTATTTTTGAAGATGAATTGAAGGCAATTTTACCACAGAATGTGGAAAATACAAGGTCAGCATATGAGAACGGAAATGCACAAATTAAGAACCAAATTGAGGAATGCAGATCTTACCCATTATATAGATTTGTGAGGGAAGAGTTGGGAACAAAATTACTCACCGGTGAAAATGTGATATCTCCAGGAGAAGAGTGTGAAAAAGTATTCACTGCTTTATGTGAAGGGAAGATGATTGATTCTATTCTAGAATGTTTGAAGGAGTGGAACGGTGCTCCAATTCTCATATATTAA 2118 40.42 MALVKTICKSSIHDPLNWGMAAESLKGSHLDEVKRMVEEYRKPCVKLDGETLTISQVAAIAIRDSDVIVELSESTKAGVKASSDWIMESINKGTDSYGITTGFGATSHRRTKQGATLQNELVRFLNAGIFGSGTESSHILPHSATRAAMLVRTNTLLQGYSGIRFEILEAITKLLNHNVTPCLPLRGTITASGDLVPLSYIVGLLTGRPNSKAIGPNGENLDAKEAFIQAGITSGFFELRPKEGFALVNSTAVGSGLASIILFDANILVVLFEILSAIFAEVMQGKLEFTDYLTHKLKHHPGQIEAVAIMEHVLDGSSYMKTAKQLHEMDPLQKPKQDRYALRTSPQWLGSLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPVGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSAGRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDINSLGLISSRKTAEVIDILKLMSSTFLVALCQAIDLRHLEENLKSAVKSTISLVAQKVLISSSNGALDPSRLFEKDLLKVVDRECTFSYIDDPCSVTYPLMQKLRQVFVEHALATGDDGNNVNTSIFQKIAIFEDELKAILPQNVENTRSAYENGNAQIKNQIEECRSYPLYRFVREELGTKLLTGENVISPGEECEKVFTALCEGKMIDSILECLKEWNGAPILIY 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11485299 11487416 + Lsi01G013260.1 Lsi01g01326 653984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01326 705 CDD PAL-HAL 50 515 IPR001106 -
Lsi01g01326 705 Gene3D Fumarase/aspartase (Central domain) 252 700 - -
Lsi01g01326 705 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 187 203 IPR022313 GO:0016841
Lsi01g01326 705 Pfam Aromatic amino acid lyase 52 526 IPR001106 -
Lsi01g01326 705 Gene3D - 5 251 IPR024083 -
Lsi01g01326 705 PANTHER HISTIDINE AMMONIA-LYASE 8 702 IPR001106 -
Lsi01g01326 705 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 8 702 - -
Lsi01g01326 705 Gene3D - 518 639 IPR023144 -
Lsi01g01326 705 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 14 695 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lsi01g01326 705 SUPERFAMILY L-aspartase-like 14 702 IPR008948 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01326 Lsi-Chr1:11485299 Lsi01g01331 Lsi-Chr1:11504847 0 dispersed
Lsi01g01326 Lsi-Chr1:11485299 Lsi01g01328 Lsi-Chr1:11489995 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01326 K10775 - csv:101219091 1238.02