Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01329 ATGGCACCTGCCCAATTGGAACAATTTGCTCACCAAAATGGCTCAATGGAGAGCTTTTGCACTAACCATGTTGATCCACTCAATTGGGGTATGGCAGCTGAGGCTCTCAAAGGAAGCCATCTTGATGAGGTGAAGAGGATGGTGGAAGAGTATAGAAGGCCTGTGGTGAAGCTGGGAGGTGAGACTCTCACCATTTCTCAAGTGGCTGCCATTGCCACTCGTGCTAATGATGTGGTTGTGGAATTGGCTGAGTCTGTTAGGGCGGGTGTTAAAGCTAGTAGTGATTGGGTGATGGAGAGTATGAATAAAGGGACTGATAGTTATGGTGTTACTACTGGATTTGGTGCTACGTCTCATAGAAGAACCAAACAAGGTGGGGCTCTTCAAAAGGAGTTGATTCGATTTTTGAATGCTGGGATTTTTGGAAATGGGGCTGAGTCGAATCATACTTTGCCTCATTCGGCAACGAGAGCGGCCATGTTGGTGAGGATCAATACTCTACTTCAAGGCTATTCAGGTATTCGATTTGAGATTTTGGAAGCTATTGCTAATCTTCTCAATCAGAACATTACTCCATGTTTGCCATTGAGAGGAACAATTACGGCATCTGGGGATCTTGTCCCTTTGTCGTATATTGCTGGGCTACTGACTGGACGTCATAACTCCAAGGCCATTGGGCCTAATGGGGAAACTCTTGATGCTGAGGCTGCCTTTAAACAAGCTGGCATTCCTTCTAGCTTCTTTGAGTTGCAGCCCAAAGAAGGCCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGGTTGGCTTCTATTGTCCTATTTGAGGCAAATATTTTGGCTGTTTTGTCAGAAATTCTTTCGGCTATTTTTGCTGAGGTCATGCAAGGAAAGCCTGAATTCACAGATCATTTGACTCACAAGTTGAAACATCACCCTGGTCAGATTGAAGCAGCTGCAATCATGGAGCACATTTTAGATGGAAGTTCTTACATGAAAGCAGCCAAGAAACTGCATGAAATTGATCCCCTCCAAAAACCTAAACAAGATCGTTATGCTCTTAGAACTTCACCTCAGTGGCTCGGTCCATTGATTGAAGTGATTCGATTCTCCACCAAGTCTATAGAGCGAGAGATTAACTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCGTTGCACGGAGGCAACTTCCAAGGAACACCAATTGGAGTTTCCATGGACAACACTCGATTGGTCATTGCTTCAATTGGGAAGCTCATGTTTGCCCAATTCTCCGAACTTGTCAATGATTTTTACAACAACGGCTTGCCTTCTAACCTTTCTGCAAGTAGAAATCCGAGCTTGGATTATGGGTTTAAAGGAACTGAAATTGCCATGGCTTCATACTGTTCTGAGCTTCAATATCTTGCAAATCCGGTGACAAGTCATGTCCAAAGTGCTGAGCAACATAACCAAGATGTTAATTCTCTTGGTTTAATTTCTTCGAGAAAAACAGCTGAAGCCATTGATATCTTGAAACTCATGTCGTCCACATTTTTGGTTGCACTCTGTCAAGCAATTGACTTGAGGCACTTGGAGGAAAACTTGAAGAGCACAGTTAAAAGCATAGTGAGCCAAGTAGCCAAGAAGGTGTTGACCACATCCTCCAATGGTGCACTACACCCATCAAGATTTTGCGAGAAGGATCTACTCAAAGTTGTTGACAGAGAATATACATTTGCATACATTGATGATCCATGCAGTGCTACTTATCCATTGATGCAAAAATTGAGACAAGTTCTTGTCGAACATGCACTCACCAATGGCGAAAATGAAAAGAACACGAACACTTCCATCTTCCAGAAGATTAGTGCTTTTGAAGAGGAATTAAAGGTAGTTTTACCAAAAGAAGTTGAAAATGCAAGGTTGGCATATGAGAGTGGAAATTCTAAAATTGGAAATCAGATTAAGGATTGCAGATCTTATCCATTATATAGATTTGTTAGAGAAGACTTGGGAACAAAACTTCTGACTGGAGAAAGGGTGATATGTCCCGGAGAAGAATGTGAAAAAGTATTTACAGCTTTGTGTCAAGGAAAGATGATTGACTCTATTTTAGAGTGCTTAAAAGAGTGGAATGGTGCTCCCATTCCTATCTGTTGA 2151 42.31 MAPAQLEQFAHQNGSMESFCTNHVDPLNWGMAAEALKGSHLDEVKRMVEEYRRPVVKLGGETLTISQVAAIATRANDVVVELAESVRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNQNITPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGETLDAEAAFKQAGIPSSFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLVIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSIVSQVAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALTNGENEKNTNTSIFQKISAFEEELKVVLPKEVENARLAYESGNSKIGNQIKDCRSYPLYRFVREDLGTKLLTGERVICPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIC 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11494207 11496357 + Lsi01G013290.1 Lsi01g01329 653987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01329 716 SUPERFAMILY L-aspartase-like 25 716 IPR008948 GO:0003824
Lsi01g01329 716 CDD PAL-HAL 61 526 IPR001106 -
Lsi01g01329 716 Gene3D Fumarase/aspartase (Central domain) 263 711 - -
Lsi01g01329 716 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 25 706 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lsi01g01329 716 Gene3D - 17 262 IPR024083 -
Lsi01g01329 716 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 21 716 - -
Lsi01g01329 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841
Lsi01g01329 716 Gene3D - 529 650 IPR023144 -
Lsi01g01329 716 PANTHER HISTIDINE AMMONIA-LYASE 21 716 IPR001106 -
Lsi01g01329 716 Pfam Aromatic amino acid lyase 63 539 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01329 Lsi-Chr1:11494207 Lsi07g00385 Lsi-Chr7:4121676 0 dispersed
Lsi01g01328 Lsi-Chr1:11489995 Lsi01g01329 Lsi-Chr1:11494207 0 tandem
Lsi01g01329 Lsi-Chr1:11494207 Lsi01g01330 Lsi-Chr1:11499128 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01329 K10775 - csv:101222092 1356.66